| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2823 |
|---|
| Symbol | |
|---|
| ID | 4673707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 2987975 |
|---|
| End bp | 2989183 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639839880 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_987040 |
|---|
| Protein GI | 121595144 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.517251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.306546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTGC TCAACTCCCT GCTGCAGGCG CTGCGCTCGA TACGGCGCAA CCTGATGCGG
TCCTTTCTCA CCGTGCTGGG CATCGTGATC GGCGTGAGCG CGGTGATCAC CATGGTCACG
CTGGGCAACG GCGCGACGCT GGCGGTGCAG GCGCAGATCT CCAGCCTGGG CACCAACCTG
CTGCAAGTGC GTCCTGGCCA GCGGCTGGGC CCCGGCGGCA GTGGCGGCGC ACCCTCGTTC
AAGGATGTGG ATGCCGAGGC CATCGCGCAG CAGATCGGCG GCATTCTGGC CGTGGCGCCC
GAGGCGCGCA CCAGTGCCAC CGTGGTGGCC AACGGGCGTA ACTGGGCCAC CAGCGTCATG
GGCAGCACCA ATGCCTGGCT GCAGACCGGC AACTGGACGC TGGAAAGCGG GCGCGAATTC
ACCACCGACG AGCTGCGCGT GGGCGCTGCC GTGTGCCTGA TCGGCCAGAC GGTGCGGCGG
GAGCTGTTCG CCGGCGGCGA TGCGCTGGGT GAGCGCGTGC GCGTGCGCCA GTTTTCGTGC
GAGGTGGTGG GCGTGCTGGC CTCCAAGGGG CAAGGCGCCT TCGGCAACGA CCAGGACGAT
CTGGTGCTGC TGCCGCTCAA GACGCTGCAG CGCCGCGTGA CGGGCTCCAC GCGCGTGCCG
ACGCTGCTGG TGTCCATGAA GGATGGCAGC GACCCCGAGC GCGTGAAGGC CAGCCTGACC
GAGTTGCTGC GCGAACGCCG CAAGCTGGCC GACACCGACG ATGACAACTT CAACGTGCTG
GACACCAAGC AACTGGCCGA CACCTTCTCG GGCACCACGC GCGTGATGAC CACGCTGCTG
GGCGCGGTGG CGGCCGTGAG CCTGCTGGTG GGCGGCATCG GCATCATGAA CATCATGCTG
GTGAGCGTGA CCGAGCGCAC GCGGGAGATC GGCCTGCGCC TGGCCATCGG CGCGCTGGAG
CGCGAGGTGC TGATGCAGTT CCTCATCGAG GCCGTGGTGC TGGCCGCTTT GGGCGGTCTC
ATCGGCATCG TGCTGGCCAC GGGCGCGTCG ATTGCGCTGG CGCAGGTGAT GGGCATCCCC
TACGTGTTCC ACGCGGGCGT GAACCTGCTG TCGTTCGTTT TCTCGGCGGG CATCGGGGTG
CTGTTCGGCT ACTTCCCGGC CCGCCGCGCC GCGCGGCTGG ACCCCATTGA GGCGCTGCGC
CATGAGTGA
|
|---|
| Protein sequence | MMLLNSLLQA LRSIRRNLMR SFLTVLGIVI GVSAVITMVT LGNGATLAVQ AQISSLGTNL
LQVRPGQRLG PGGSGGAPSF KDVDAEAIAQ QIGGILAVAP EARTSATVVA NGRNWATSVM
GSTNAWLQTG NWTLESGREF TTDELRVGAA VCLIGQTVRR ELFAGGDALG ERVRVRQFSC
EVVGVLASKG QGAFGNDQDD LVLLPLKTLQ RRVTGSTRVP TLLVSMKDGS DPERVKASLT
ELLRERRKLA DTDDDNFNVL DTKQLADTFS GTTRVMTTLL GAVAAVSLLV GGIGIMNIML
VSVTERTREI GLRLAIGALE REVLMQFLIE AVVLAALGGL IGIVLATGAS IALAQVMGIP
YVFHAGVNLL SFVFSAGIGV LFGYFPARRA ARLDPIEALR HE
|
|---|
| |