| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2578 |
|---|
| Symbol | |
|---|
| ID | 4674250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 2742853 |
|---|
| End bp | 2744217 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639839645 |
|---|
| Product | peptidase RseP |
|---|
| Protein accession | YP_986812 |
|---|
| Protein GI | 121594916 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.041357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0436564 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTGA CTGTCGTTGC CTTCATCGTT GCGTTGGGCG TACTGATCGC CGTGCATGAG
TACGGCCATT ACCGTGTGGC GGTGGCCTGC GGTGTCAAGG TCCTCCGCTT CTCGGTCGGC
TTTGGCAAGC CTTTGCTGCG TTGGCAGCCC AAGGGTTCAC CCACGGAATT CGTCATCGGC
GCCTTTCCGC TGGGAGGGTA CGTGCGCATG CTGGACGAGC GCGAGGCGCC CGTCGAGCCG
CATGAACGCC ACCTGGCCTT CAATACCCAG CCCCTGCGTT CGCGCGCCGC CATCGTTGCC
GCGGGGCCGC TGGCCAATCT GCTGCTGGCG GTGCTGTTGT ATGCCGCCGT CAACTGGAGC
GGCGTGGACG AGCCCAAGGC CTACCTGGCC AGCCCTGTAG CGGGCTCGGT GGCCGAGCAG
GCGGGCCTGC GCGGCGGCGA ACTGGTGGTG TCCGCCGGGC TGGGCGAGGG CGATTTCGAG
CCCGTGCGCT CGTTCGAAGA CCTGCGCTGG ACGCTCACGC GCGGCGCGCT GGACGGGGAG
AACGTGCGGC TGCTGCTGCA GCCAGAGCGC GGAACGACGC CGCGCGAGGT GCTGTTGCGC
ATAGATCAGC TGGACGTGCG CGAGGCCGAT GTGCAGCTGT ATCGCCGCAT CGGCATCACC
GCGCCCTGGA CGCGTCCCGT GTTGGGCGAG GTCGTGCCAG GCGGCGCGGC TGCGCGTGCG
GGGCTGCGCG CTGGCGATGT GGTTCTGCGC CTGGGCAATG CGGCGGTGGT GGATGGCGTG
CAACTGCGCG AGCTGATACG CGCGTCCGTG CAGGCGGGCC GGCCGCTCAC GCAGGTCTGG
CGCATCGAGC GCGACGGTCA GCCGCGCGAC CTGGAAGTCA CGCCCGAAGT GGCGCAGGAG
GCGGGCGGCG CCGTGGGACG CGTCGGCGCC TATGTGGGCG CGCCGCCCGA GATGGTGAAC
GTGCATTACG GCCCCTTGGA AGGGCTCTGG AAAGGCACGG TGCGCACATG GGAGGTGTCG
GTCCTCACGC TGCGCATGAT GGGCCGCATG GTGATCGGTG AGGCTTCGCT CAAGAACCTC
AGCGGGCCGC TGACCATCGC CGATTACGCG GGCCGTTCCG CCAGCATGGG GCTGACCCAG
TACCTCAGCT TCCTCGCACT CATCAGCGTG AGCCTGGGAG TGCTGAACCT GCTTCCGCTG
CCCGTATTGG ATGGGGGGCA CCTGATGTAT TATCTTTGGG AGGGGGTGAC GGGACGGGGC
GTGTCCGAAG CCTGGATGGA GCGGCTGCAG CGCACAGGCG TCGCGGTGCT TCTCCTCATG
ATGTCCATCG CCCTGTTCAA CGACCTCACC CGGCTTTTTG GCTAA
|
|---|
| Protein sequence | MLLTVVAFIV ALGVLIAVHE YGHYRVAVAC GVKVLRFSVG FGKPLLRWQP KGSPTEFVIG
AFPLGGYVRM LDEREAPVEP HERHLAFNTQ PLRSRAAIVA AGPLANLLLA VLLYAAVNWS
GVDEPKAYLA SPVAGSVAEQ AGLRGGELVV SAGLGEGDFE PVRSFEDLRW TLTRGALDGE
NVRLLLQPER GTTPREVLLR IDQLDVREAD VQLYRRIGIT APWTRPVLGE VVPGGAAARA
GLRAGDVVLR LGNAAVVDGV QLRELIRASV QAGRPLTQVW RIERDGQPRD LEVTPEVAQE
AGGAVGRVGA YVGAPPEMVN VHYGPLEGLW KGTVRTWEVS VLTLRMMGRM VIGEASLKNL
SGPLTIADYA GRSASMGLTQ YLSFLALISV SLGVLNLLPL PVLDGGHLMY YLWEGVTGRG
VSEAWMERLQ RTGVAVLLLM MSIALFNDLT RLFG
|
|---|
| |