| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2568 |
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| Symbol | |
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| ID | 4670866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 2731915 |
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| End bp | 2734209 |
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| Gene Length | 2295 bp |
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| Protein Length | 764 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 639839633 |
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| Product | ribonuclease R |
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| Protein accession | YP_986802 |
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| Protein GI | 121594906 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0166651 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTATATCA AAAAAAATCA CTCTGAATCA TCCGTCGCCA AAGTTTCACT GGACGAGATC
GAAGGCACCG TCCAGGGACA CCGCGACGGG CATGGCTTCG TCCTGCGCGA TGACGGCCAG
CCTGACATCT ACCTTCCTGC CAATGAAATG CGGGCGGTAT TGCACAAGGA CCGGGTGCGC
GTGCGCATCG CGCGCCAGGA CCGGCGCGGC CGGCCTGAAG GCCGCGTGGT CGAGATTCTG
GAGCGCCCGC CCCAACCCAT CATCGGGCGC CTTCTTCAGG AGAGCGGTGT CTGGCTGGTC
GCCCCTGAGG ACAAACGGTA CGGCCAGGAC GTGCTGATTC CCAAGGGTGC TACGGGGGCT
GCTGCGACGG GACAGGTCGT GGTGGTGGAG CTGACCGAGC CGCCGGCTTT GTTTGGGCAA
CCCGTGGGGC GGGTGGTCGA AGTGCTGGGG GAGGTAGACG ACCCCGGGAT GGAGGTGGAA
ATTGCCGTGC GCAAATACGG GGTTCCGCAT GAATTCTCCG AAGCGTGCCT TGACCAGGCG
AAGGCGCTGC CGGACAAGGT GCGCGCTCAG GACAAGCGTC GACGCGTTGA TCTGACAGAT
GTCCCCCTGG TCACCATCGA TGGTGAAGAC GCGCGCGACT TCGACGACGC GGTGTATTGC
GAACCCGCCA AGATCGGGCG CGCCAAGGGG TGGCGCCTGC TCGTGGCCAT CGCGGACGTG
AGCCACTATG TGGAGACAGG CAACGCCATC GATATTGACG CCTATGACCG GGCGACCAGC
GTTTATTTCC CGCGGCGCGT TATCCCCATG CTGCCAGAGA AGCTCTCCAA CGGGCTGTGC
TCGCTGAACC CCCATGTCGA GCGCCTGTGC ATGGTGTGCG ACATGATGGT TACCGCCAAA
GGTGAAATTC ACGCCTATCA GTTCTATCCT GCGGTCATGC TCAGCCACGC GCGGCTTACC
TATACCGAGG TGGCTGCGGT GTTGGCCAAT ACGCGCGGCC CGGAAGCGCT GAAGCATCAA
GAGCGCGTGG GCAACCTGCT CAACCTCTAC GAGGTCTACC GCGCATTGCT AGCGGCGCGG
CAGGCGCGCG GCGCCGTGGA CTTCGAGACG ACCGAGACGC AAATCGTCTG TGATGACAAT
GGCCGTATCG AGAAAATCGT CCCGCGTGTA CGCACCGAGG CGCACCGCCT GATTGAGGAG
GCGATGCTCG CCGCCAACGT CTGCAGCGCC GATTTCATCG GTCATGCCGG CCGGGCGGGG
CTGTATCGCG TTCATGAGGG GCCTACGCCG GAGAAGCAAG AGATCCTGCG TGCATATCTC
AAAGCCATGG GTGTTGGCAT GTCGATCGGG GACGACCCGC GGCCGGCAGA ATTCCAGGCG
ATTGCCGAGG CCACCAAGGA CCGGGTGGAT GCGCAGCAGA TCCACACCAT GCTGCTGCGT
TCGATGCAGC AGGCGATCTA CACGCCTGTC AACAGCGGTC ACTTCGGTTT GGCATTCGAA
GCCTATACAC ACTTCACCAG TCCTATTCGC CGCTACCCGG ATCTGCTGGT GCATCGCGTG
ATCAAGTCCA TCTTGAGCGG CACCAAATAT GTGCTGCCCG CGCTGCCGAC GCCGGGGGAG
GCTCAGTTCA AGCTGGCCAA GCGTCTGGCT TCCAAGGGGG GTGAATCCTC TGCACGCCCT
TCCAAGACGG GTGGCGTTAT CAGCGTCCGG GAGACGCAGG CGTGGGAGGC CGCGGGACTG
CACTGCAGTG CGAACGAACG CCGTGCGGAC GAGGCCAGTC GCGACGTGGA AGCCTGGCTC
AAGTGCCAGT ACATGCGTGA GCATCTGGGT GAAGAGTACG GCGGTGTCGT CAGCACGGTG
ACGAGCTTCG GCATCTTCGT GACGCTTGAT GCCCTCTATG TGGAAGGGTT GGTGCACATC
ACGGAACTGG GTGGGGAGTA CTTCAAGTTC GATGAGGCGC GGCAAGAATT GCGGGGGGAG
CGCACGGGTA TCCGCTATGC GATTGGTGCA CGCGTGCGTG TTCAGGTCAG CCGCGTCGAC
CTCGATGGCC GCAAGATCGA CTTCCGGCTG GTGCACGAAG CCGGCGACGG TTTCTCCACC
AAAGGCCCTA AGTCCAGGGA TGGCGCGAAA CGCGGTTCCT CGGCAGCGGC CATGGATGGT
CGATCCGCCT CGGTGCCCGC GGCCCGGGAA AGCAGAGAGG AGGGGAGCCG GCGGCGCCCG
CATAAGCAGG CCTTGGCCGG CAAAAAAGCG GCAGGTGGCA AGAACCCTTC TAAGGGCCGC
AAATCCCGCG GTTGA
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| Protein sequence | MYIKKNHSES SVAKVSLDEI EGTVQGHRDG HGFVLRDDGQ PDIYLPANEM RAVLHKDRVR
VRIARQDRRG RPEGRVVEIL ERPPQPIIGR LLQESGVWLV APEDKRYGQD VLIPKGATGA
AATGQVVVVE LTEPPALFGQ PVGRVVEVLG EVDDPGMEVE IAVRKYGVPH EFSEACLDQA
KALPDKVRAQ DKRRRVDLTD VPLVTIDGED ARDFDDAVYC EPAKIGRAKG WRLLVAIADV
SHYVETGNAI DIDAYDRATS VYFPRRVIPM LPEKLSNGLC SLNPHVERLC MVCDMMVTAK
GEIHAYQFYP AVMLSHARLT YTEVAAVLAN TRGPEALKHQ ERVGNLLNLY EVYRALLAAR
QARGAVDFET TETQIVCDDN GRIEKIVPRV RTEAHRLIEE AMLAANVCSA DFIGHAGRAG
LYRVHEGPTP EKQEILRAYL KAMGVGMSIG DDPRPAEFQA IAEATKDRVD AQQIHTMLLR
SMQQAIYTPV NSGHFGLAFE AYTHFTSPIR RYPDLLVHRV IKSILSGTKY VLPALPTPGE
AQFKLAKRLA SKGGESSARP SKTGGVISVR ETQAWEAAGL HCSANERRAD EASRDVEAWL
KCQYMREHLG EEYGGVVSTV TSFGIFVTLD ALYVEGLVHI TELGGEYFKF DEARQELRGE
RTGIRYAIGA RVRVQVSRVD LDGRKIDFRL VHEAGDGFST KGPKSRDGAK RGSSAAAMDG
RSASVPAARE SREEGSRRRP HKQALAGKKA AGGKNPSKGR KSRG
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