| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2523 |
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| Symbol | ligD |
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| ID | 4673244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 2685104 |
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| End bp | 2687617 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639839590 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_986759 |
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| Protein GI | 121594863 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00000543878 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCCCGCA AAGACCCGCT GGCGGTGTAC AAGCAAAAGC GCAACTTTGC CGTGACGCCA
GAGCCCGCGG ACGGCGGAGC GCAGTCGCAG GCGCTGCAGT ACGTAATCCA GAAGCACTGG
GCCAGCCGCC TGCACTATGA CCTGCGCCTG GAGCTGGACG GCACCATGAA GAGCTGGGCC
GTACCCAAGG GCCCCAGTTA CGACCCGGCG GACAAACGCA TGGCCGTGCA GGTGGAAGAC
CACCCGATTT CCTACAACCA ATTCGAAGGG CAGATCCCGC CGCGCCAATA CGGCGCGGGG
CGGGTCATCA TCTGGGACCG CGGCTATTGG GTACCGCAGG GCAATCCGCG CGAAGACTAC
CGCAAGGGGA AGCTCAAGTT CGAGATCCAC GGCCACAAAT TGCACGGCCA CTGGACCCTG
GTGCGTATGC ATGGCCGGGA CGACGATAAG CAGCCCCCCT GGCTGCTGAT CAAGGAGTGC
GACGGGCTAG AGCGTGCGGC CGAGGAGTTC AACGTGGTGG ACGAAATGCC CGACAGCGTG
GCAGACCAGC CGCCGGTTGC GCCACCAGCG CGCGCATTCG CTCAGCGGGC CGGGCCCGCG
CAGATTCAGC CCACGGCAGC GGCGGTGCCG TGGACATCCG CGCCCACGGC ACCGCTGCCT
GACCAGCTAT CCCCGCAACT TGCCACGCTG GTGGACGGAC CGCCGGCCGA CCTTACGCAG
TGGCTGTGGG AGCTCAAGTT CGACGGCTAT CGCATGCTGG CCCGGGTTCA GCGCGGCAAG
GCACGGCTGT ACACCCGTAA CGGCAACGAC TGGACCGCCA GGATGCCCGC CCTGGCGCAA
GCGCTGGCCG CCTTGCCGCT GTCCTCTGCA TGGATCGACG GCGAGGTGCT GGTGCTGGAC
GCCCAGGGTG TCCCCGACTT CCAGGCGCTG CAGAATGCGT TTGACGGGCG ATCGACCGAC
GCGCTGGTCT TTTATGCCTT CGATTTGCCT TATGCGCACG GGCGCGATCT GAGGCAGATG
CCCCTCGCTG AACGGCGTGC GCTGCTGCGC AGTGTGCTGC AACCAGCCTC CTCAGACCGG
GTGCGGTTCA GCGAAGCGTT CGAAGCCCGG CCCGCGGACC TGGTGGCCTC GGCCTGCCGG
CTGGGATTTG AAGGGGTGAT CGGCAAGCGC AAGGACAGCG TGTATGCCTC CCGCCGCAGC
ACGGACTGGA TCAAGCTCAA GTGCAGCCAT CGGCAAGAGT TCGTCATCGG CGGATACACC
GACCCGCAGG GCTCACGCAC AGGGATCGGT TCACTGCTGC TGGGCGTGCA TGACGAGGGC
GGTGCCCTGC GCTATGCCGG CAACGTGGGT ACGGGTTTCA GCGAGCGCGT CCTCGCGGAC
CTGGCCCGGC GGCTGGGCGC TTTGCGCACC CAGGACAGCC CGTTTGCCCA GCCGCGCTCC
ATCCCCCGCA AGGTGCATTG GGTGAGGCCC ACGCTGGTGG CGGAGGTTTC CTTCGCCGAA
TGGACGAAAG AAGGCAAGGT GCGCCACGCC GTATTCCGCG GGTTGCGTGA CGACAAGCCC
GCCGCCGCCA TCGTCCACGA GGAGCCTGCG CACCTGCAGG GGGCTGCGCC CAGCCGCGCC
GCGCGCGTGG GAGGGCTGCA GGTGACAAGT CCGGCGCGCG TGGTGGATCC CTCCACCGGG
TTCACCAAGC TTGATCTGGT GCGGTACTAC GCCACGGTAG CGCCCCTCAT GTTGCCCCAC
CTGCAGGGGC GGCCGGTGTC CCTGCTGCGG GCGCCGCAAG GTCTGGAGGG CGAGCTTTTC
TTTCAAAAGC ACCTGGACAC GGGGGCATTG GACGGGGTGA GTGCGCTGTC ACCCGACCTG
GATCCTGGCC ACCCGCCGCT GCTGGAAGTG GCCACGGCGC AGGGCCTGCT GTCGGCCGCG
CAAATGAACA CCGTGGAGTT TCACACATGG AATGCTCGCA AGGACCGGAT CGAGCGGCCC
AACCGCATCA CCTTCGACTT GGATCCGGGC GAGGGCGTGC CGTGGGCGCA CGTGCAAGAG
GGCGCAGCGC TCGTGCGCTT GATGCTCACC GAGCTGGGCC TGCCATCGTT CCTCAAGACC
AGCGGCGGCA AGGGGCTGCA TGTGGTGGTG CCCATCAAGC GACTGCACGG CTGGGATGCC
GTGAAAGACT TCAGCCAAGC CGTGGTGCAG CATCTGGCGC GCACCCTGCC GCAGCGCTTC
GTGGCCAAGA GCGGGCCCCG CAACCGCGTG GGAAAGATCT TTGTGGACTA CCTGCGCAAT
GGCTTTGGCG CCACCACGGC CTGTGCGTGG ACGGCGCGCG CGCGGCCGGG CATGGGCGTG
TCCGTGCCCG TCGCCTGGCA GGAACTGGAC GCGCTCACGG GTGGCGCCCA CTGGACGGTG
CAGACCGTGG ACCGGCGCTT GAAGACCGGC AATGGCCCCT GGTCAGGCTA TGACGAGGCT
GCCGTGTCCA TCGGGCCGGC GATCAAGGCG CTCGGGGAAA AACGCCACAC ATAG
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| Protein sequence | MPRKDPLAVY KQKRNFAVTP EPADGGAQSQ ALQYVIQKHW ASRLHYDLRL ELDGTMKSWA
VPKGPSYDPA DKRMAVQVED HPISYNQFEG QIPPRQYGAG RVIIWDRGYW VPQGNPREDY
RKGKLKFEIH GHKLHGHWTL VRMHGRDDDK QPPWLLIKEC DGLERAAEEF NVVDEMPDSV
ADQPPVAPPA RAFAQRAGPA QIQPTAAAVP WTSAPTAPLP DQLSPQLATL VDGPPADLTQ
WLWELKFDGY RMLARVQRGK ARLYTRNGND WTARMPALAQ ALAALPLSSA WIDGEVLVLD
AQGVPDFQAL QNAFDGRSTD ALVFYAFDLP YAHGRDLRQM PLAERRALLR SVLQPASSDR
VRFSEAFEAR PADLVASACR LGFEGVIGKR KDSVYASRRS TDWIKLKCSH RQEFVIGGYT
DPQGSRTGIG SLLLGVHDEG GALRYAGNVG TGFSERVLAD LARRLGALRT QDSPFAQPRS
IPRKVHWVRP TLVAEVSFAE WTKEGKVRHA VFRGLRDDKP AAAIVHEEPA HLQGAAPSRA
ARVGGLQVTS PARVVDPSTG FTKLDLVRYY ATVAPLMLPH LQGRPVSLLR APQGLEGELF
FQKHLDTGAL DGVSALSPDL DPGHPPLLEV ATAQGLLSAA QMNTVEFHTW NARKDRIERP
NRITFDLDPG EGVPWAHVQE GAALVRLMLT ELGLPSFLKT SGGKGLHVVV PIKRLHGWDA
VKDFSQAVVQ HLARTLPQRF VAKSGPRNRV GKIFVDYLRN GFGATTACAW TARARPGMGV
SVPVAWQELD ALTGGAHWTV QTVDRRLKTG NGPWSGYDEA AVSIGPAIKA LGEKRHT
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