| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2413 |
|---|
| Symbol | rumA |
|---|
| ID | 4671358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 2562710 |
|---|
| End bp | 2564158 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639839481 |
|---|
| Product | 23S rRNA 5-methyluridine methyltransferase |
|---|
| Protein accession | YP_986650 |
|---|
| Protein GI | 121594754 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.798593 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.546422 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACC CCACAGAATT CAGCCCACCA CCGCCCACCT CCACGGATCT TCCCCCCGGC
TGGCTCGAAG TCACCGCCAT GGACATGGAC GCCCAAGGCG TCGCGCGCAA GCCCGATGGC
AAGGTGGTGT TCATCGACGG CGCACTGCCC ACCGAGCTGG TCAGCGCCAA CACCCACCGC
AAGAAGAACA ACTGGGAGCA GGCCAGCCTG ACGGAAGTCC ACCGCCAGTC CAGCCAGCGC
GTACAGCCCG GCTGCCCGCA CTTCGGCCTG CATGCGGGCG CCTGCGGCGG CTGCAAGATG
CAGCATCTGC ACGTGGCGGC CCAGGTGGCC GTGAAACAGC GCGTGCTGGA AGACAACCTC
TGGCACCTGG GGAAAGTGAA GGCCGAGACC ATCCTGCGCC CCATTGAAGG CCCTGCCTGG
GGCTACCGCT ACCGCGCGCG CCTGTCCGTG CGCTACGTGC CCAAGAAGGA CAAGGTGCTC
GTGGGCTTTC ACGAGCGCAA GAGCCGCTAC ATCGCCGACA TGGAGACCTG CAAGATCCTG
CCGCCGCATG TGGACGCCAT GCTGATGCCG CTGCGCGCCC TGATCGGCAG CATGGCCGCA
CGCGACACCT GCCCGCAGAT CGAGCTGGCC TGCGGCGATA CGGTCACGGC GCTGGTGCTG
CGCCACCTGG AGCCGCTGTC CCCGGAGGAC AAAGACAAGT TGCGCGCCTT TGCCGCCGTG
CATGGCGTGC AATGGTGGCT GCAGCCCAAA GGGCCGGAAA CGGTGCATCT GCTGGACGAG
GGCGGCGAGC CGCTTGCCTA TGGGCTGCCC GACTTCGGCA TCACCATGCC CTTCAAACCC
ACCGACTTCA CGCAGGTCAA CCCGCACATC AACCGCGTGC TGGTCACGCG CGCGCTGCGC
CTGCTGGACG CGCGCAAGGA CGAGCGCGTG ATCGACTGGT TCTGCGGCCT GGGCAACTTC
ACGCTGCCCA TCGCCACCCA GGCGCGCGAG GTGCTGGGCA TCGAGGGCAG CGAGGCGCTG
GTGGCGCGTT CGCGCGAGAA TTACCAGTCA AATCAGGCCC AAAGGCAAGA TGGATCTGCG
CTGGCAGCTA CCAGCTTTGT AGCGCGCAAC CTGTTCGAGA TGACGCCTGA GATGCTCATT
GCCGATGGCG CCTCCGACAA ATGGCTGGTG GACCCGCCGC GCGAGGGGGC GTTCGCCTTG
TCCAAGGCGC TGGCGGACAT CCACCAGGCG CGCATCGGTG CCGAGGACGC GCCGCCGCTG
CCCGCTGGGC ACGAAGGCTG GCAGCCGCCC CGGCGCATCG TCTACGTGAG CTGCAACCCC
GCCACGCTGG CGCGGGACGC GGGCCTGCTG GTGCACCAGG CGGGCTACCG CTGTGTGGCG
GCGGGGGTGG TCAACATGTT TCCGCACACG GCCCATGTGG AGAGCATGGC AGTGTTCGAG
CGGGGCTGA
|
|---|
| Protein sequence | MSDPTEFSPP PPTSTDLPPG WLEVTAMDMD AQGVARKPDG KVVFIDGALP TELVSANTHR
KKNNWEQASL TEVHRQSSQR VQPGCPHFGL HAGACGGCKM QHLHVAAQVA VKQRVLEDNL
WHLGKVKAET ILRPIEGPAW GYRYRARLSV RYVPKKDKVL VGFHERKSRY IADMETCKIL
PPHVDAMLMP LRALIGSMAA RDTCPQIELA CGDTVTALVL RHLEPLSPED KDKLRAFAAV
HGVQWWLQPK GPETVHLLDE GGEPLAYGLP DFGITMPFKP TDFTQVNPHI NRVLVTRALR
LLDARKDERV IDWFCGLGNF TLPIATQARE VLGIEGSEAL VARSRENYQS NQAQRQDGSA
LAATSFVARN LFEMTPEMLI ADGASDKWLV DPPREGAFAL SKALADIHQA RIGAEDAPPL
PAGHEGWQPP RRIVYVSCNP ATLARDAGLL VHQAGYRCVA AGVVNMFPHT AHVESMAVFE
RG
|
|---|
| |