| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2365 |
|---|
| Symbol | |
|---|
| ID | 4672614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 2514250 |
|---|
| End bp | 2515626 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639839432 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_986602 |
|---|
| Protein GI | 121594706 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.469261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.875331 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGC TGTCCACCAT TGCACGGCAC GCACTCACCG TGCTGGCCGG GCAGCTTGCG
GTGATGGCCT TCGGGGTCAC CGACACCATC GTTGCCGGAC GCCATTCGCA GGAGTCCCTG
GCCGCCCTCT CCATCGGCTC AGCCGTGTTC GTGAGCGTGT ACGTGGCGCT CATGGGTGTG
TTGCAGGCCT TGCTGCCCAT CTGGGCCGAG CAGCGCGGCG CGAACGCACA GGCCGGCATG
GGCGCCAGCG TGCGCCAGTC GCTGTACCTG TGGGCGGGTG CCGCGGTGCT GGGCATGGCC
GTGCTGCTGT CGCCAGGCCC ACTCCTGCAA TGGACCGAGG TGCCGCCGGC GCTGCGCGGT
GAGGTGCAGG CCTACCTGGC CATCCTCGCG TTCGGCCTGC CGCCTGCATT GCTGTTTCGC
ATCTACAGCA CCCTCAACCA GGCTTTGGGG CACCCGCAGC TCGTCACCTG GCTGCAGGTC
GGCTCGCTGG CGGTCAAAGT GCCGCTCTCG GTCTGGTTCA CCTTCGGCGG TGCCGGTCTG
GCGCCGCAGG GTGCTGCAGG CTGCGCGTGG GCCACGCTGG CCGTGAACTA CGGCCTGATG
CTGCTGGGCT GGTGGATGCT GCGTCGCCAC ACGATGTACG GCCCGCTGCG GCTGTGGCGC
CCGTTGGAGC GGCCCGACCC CGCGCAGATC GCGCGCTTTC TGCGGCTGGG CCTGCCAGCG
GGCTTGTCCA TCCTGGTGGA GGTGACTTCC TTCACGCTGA TGGCGCTGTT CATCGCACGC
CAGGGGGCGT TGGCCTCGGC TGCGCACCAG ATCGCTTCCA ACCTCGCCGC CGTGCTCTAC
ATGGTGCCTT TGTCGCTGGC CATTGCCGCA AGCGCCCGCG TGAGCTTCTG GCGTGGCGCG
GGGAACGAGC ACCAGGCCGC TGCCGTCGCC TTGAAGGGTT TTTGGCTTGC AGCGCTTATG
GGATGTGCGC TAGCAGCTAT ATTATTAATA GCAAAAGACA CGATCACGGC CTTGTACTCC
ACCAGCGCGG AAGTCGTCGC CATGGCTGGC GCGCTGGCAG TATGGGTGGC CGCCTACCAT
GTGGCGGATG CCCTGCAGAC GCTGTGCATC TTCGTGCTGC GCAGCTACCG CATCACGCTG
GCGCCATTGG CGGTCTATTG CGTGCTGCTG TGGGGCGTGG GACTGTATGG AGGCTACGTG
TTGGCCTACC GCGGCCTGGC GGGTTGGGGG CCGATGCATT CCCCTTCGCC TTTTTGGGCC
GCCAGCGCTG CCGCTCTAGG CGCGACGGCG TTGATTTTCA CGGCCCTGCT GCTGGGCGTG
CTCAGGCTGC AGACACGCCG GGCGGCTCCG CCGCTACCGC AGGAACCCCA CCGCTGA
|
|---|
| Protein sequence | MSELSTIARH ALTVLAGQLA VMAFGVTDTI VAGRHSQESL AALSIGSAVF VSVYVALMGV
LQALLPIWAE QRGANAQAGM GASVRQSLYL WAGAAVLGMA VLLSPGPLLQ WTEVPPALRG
EVQAYLAILA FGLPPALLFR IYSTLNQALG HPQLVTWLQV GSLAVKVPLS VWFTFGGAGL
APQGAAGCAW ATLAVNYGLM LLGWWMLRRH TMYGPLRLWR PLERPDPAQI ARFLRLGLPA
GLSILVEVTS FTLMALFIAR QGALASAAHQ IASNLAAVLY MVPLSLAIAA SARVSFWRGA
GNEHQAAAVA LKGFWLAALM GCALAAILLI AKDTITALYS TSAEVVAMAG ALAVWVAAYH
VADALQTLCI FVLRSYRITL APLAVYCVLL WGVGLYGGYV LAYRGLAGWG PMHSPSPFWA
ASAAALGATA LIFTALLLGV LRLQTRRAAP PLPQEPHR
|
|---|
| |