| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2359 |
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| Symbol | |
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| ID | 4672605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 2505494 |
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| End bp | 2506972 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639839426 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_986596 |
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| Protein GI | 121594700 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.477892 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.303291 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTGC GGATTACCAT CGCCGGCCTG CGTATGCCCT TCGCCCTCCC CGCCCTCGTG
TCGCTCCTTG ACAGCCCAGC GCTGCGCGCG GGCCTGCTCG GGATCTGCGT CACCATCGCC
GGATGTATGG CAGGGGTGCG AACGGACGTG CCCTCCCCCG CGCTGCTGCC CGCCGCATGG
CCCGCGCCAC CCGTCGCCTT CGATGACAGC TCCGTCGGCG TTGACGATCG GGCCGAGTGG
GGCATGTTCT ACCGCGATCC CACACTGCAA GGCCTGGTGC GCCAGGCGCT CGAGAACAAC
CGCGACCTGC GCCTGGCGAT GCTGCGCGTG GACGAGGCGC GCGCCGCCCT GGGCCTACAG
TCCGCCGATC GCTGGCCGAC CCTGGCCGTG GGCAGCAGCC ACACCCGCGC CCGCGTGCCG
GGGGATCTGA ACGTGAGCGG CCGCGCCGTC ACCACCGGCG AGCACCGCGT GGGCCTTGCC
ATCAGCAACT GGGAGCTGGA TCTGTGGGGC CGCGTGCGCA GCCTGGAGGC GGCAGCGCAG
CAGGCCTACT TCGCCTCCGC CGAAGGCAGC CGCGCCGCCC AGGCCGCACT GGTGAACCAG
GTGGCACGCA ACTACCTCGC ATGGCGCGAA ACGCAGGAAC GCATCGCGCT GACAGAAGAC
ACCATCGCCA CGCGCCGCGA GAGCCTGCGC ATCTTCGGGC GCCGCCACGC GGCCGGCGCC
ATCTCGCGCC TGGCGCTGAC GCAGGTGGAA TCTCTGCTGT ACCAGGCCGA ATCCATCGGC
ACCCAGCTCG CGCAGCAGCA GGCACTGCAG GCCCATGCGC TGGCGCAGCT CGTGGGCGTA
CCGTGGGATG CGCTGGCCCT GGCGCCGCCC CAGGCTGCCG TCGCCCTTCC CACCGTGCCC
GCGGGATTGC CTTCCGACCT GCTGCTGCGC CGCCCCGACA TTGCCGCCGC CGAGCACACC
CTGCACGCCG CCAACGCCCG CGTGCAAGCC GCGCGCGCAG CGTTCTTTCC GCGCATCGCT
CTGACCACGA GTGCGGGCAC CGCCAGCGCG CACCTGGACG GCCTGTTCGA CAGCGGCAGC
CGCGCCTGGA CGTTCGCTCC CAGCATCTCT GTGCCGCTCT TCGACGGCGG GCGCCTGCAG
TCCAACCTGG ATCTGAGCGC CGCACGCCAG AACATCGCTG TGGCCGACTA CGAAAAGACC
GTGCAGACGG CCTTCCGCGA AGTGTCAGAC GCATTGGCCA CGCGCGCCAC GGCAGCGCGC
CAGATCACGC TGCAGCAGGC CCAGCGCGAC GCCTTGCATG AACGCGCACG TTTGGCGCAA
CTGCGCTACG ACCACGGTGC CACGCCCTAC TTCGAAGTGC TGGATGCCCA GCGCGACCTG
CTGGCCGCCG AGCAGCAACT CGTGCAGGCA CGCTATGCGC TACAGGCAGC ACACATCGCC
GTCTATGCCG CGCTGGGCGG CGGCGCGCCC GCGCGCTGA
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| Protein sequence | MKLRITIAGL RMPFALPALV SLLDSPALRA GLLGICVTIA GCMAGVRTDV PSPALLPAAW
PAPPVAFDDS SVGVDDRAEW GMFYRDPTLQ GLVRQALENN RDLRLAMLRV DEARAALGLQ
SADRWPTLAV GSSHTRARVP GDLNVSGRAV TTGEHRVGLA ISNWELDLWG RVRSLEAAAQ
QAYFASAEGS RAAQAALVNQ VARNYLAWRE TQERIALTED TIATRRESLR IFGRRHAAGA
ISRLALTQVE SLLYQAESIG TQLAQQQALQ AHALAQLVGV PWDALALAPP QAAVALPTVP
AGLPSDLLLR RPDIAAAEHT LHAANARVQA ARAAFFPRIA LTTSAGTASA HLDGLFDSGS
RAWTFAPSIS VPLFDGGRLQ SNLDLSAARQ NIAVADYEKT VQTAFREVSD ALATRATAAR
QITLQQAQRD ALHERARLAQ LRYDHGATPY FEVLDAQRDL LAAEQQLVQA RYALQAAHIA
VYAALGGGAP AR
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