| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2332 |
|---|
| Symbol | |
|---|
| ID | 4673655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 2474422 |
|---|
| End bp | 2475975 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639839399 |
|---|
| Product | PepSY-associated TM helix domain-containing protein |
|---|
| Protein accession | YP_986569 |
|---|
| Protein GI | 121594673 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.348267 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGCATG CCAAACGCTG GCTGTTTCTG GTCCACCGCT GGCTGGGCGT GCTGCTGTGC
GCCTTCTTCG CCATGTGGTT CGTCTCCGGC GTGGTGATGA TGTACGTGGG CTATCCCAAG
CTCACGCCCG CCGAGCGGCT GATGCACCTG CCGCCGCTGC GCGGCGCCGC CGTGGCGCTG
GAGCCCGACC AGGCCCTGGC CGCCGCCGGG CTGCAGGGCC CGCTGCGCGA CCTGCGGCTG
GCCGTGGCCA GCGGTGGGCG GGCGGTGTAT CTGGCCACGC CCCAGCCGTC CAAGGCCGCC
CCGCCCGGCG ACGCACGCCC GCGCGGCGCC CCGGTGGTGA TCGACGCCCG CACCGGCGCC
GTGCTCATGG CCGTCGACGC GCCACGGGCA TTGGCCAGCG CTGCAGCCTA CGCGCAGGGT
CCGGCCCATG CCGTTCACGA AGGCAGGCTG CAGGAAGACG CCTTCACCCA CTCCCGCGCG
CTGGACATGC ACCGACCGCT GCACCGCGTG CGCCTGGGCG ATGCACACGA CACGGTGCTT
TACATCTCCG GCACGACCGG CGAGGTGGTG CGCGATGCCA CACGCACCGA GCGCCAATGG
AACTACGCGG GCGCGTGGCT GCACTGGCTG TACCCGCTGC GCGGCGGCCT GGTGGACCGC
TACTGGGCGG ACATCGTCAA TGCGCTGTCG CTGCTGGGTA TCGCCGCAGT GGTCACAGGC
GGCGTGATCG GCATCCTTCG CTGGCGCTTC GCGGGCACCT ACCGCAGCGG CCGGCGTACG
CCGTTCCCGT CCGCATGGGC GCGCTGGCAC CACGTGGCGG GCCTGCTGTT CATGGTCGTC
ACGCTCGCCT GGATCTTCAG CGGCCTGATG TCCATGAACC CCTGGCGCAT CTTCGACAGC
GGCGCACCCG CTCTGCGCAC CAACGCCATG CACGGCGGGC CCCTGCAGCT GCCGCACGCA
GGCGCACCCG TGGCCGCCCT GCTGCAGGCT GCGCCCACCG ACACGCGCGA ACTGCGCTGG
ACGCGCACCG CCGGCCATAC GCTGGTGCAG GCATTGCCCG CCTCTGGCCC GCCCACGGTG
CTGGACGCGC ATACCGCCCT GCCCCACGCA TGGCAGCCGG GAGAGCTGGA AGCCGCCGCC
GCCCGGCTGG TCGATGCGCC GCTACAGCGC GTCGAGACCC TGCGCGCGTA CGACGCTTAT
TACTACACGC GGGATGCCCA CACCATGACC GGCGGCACCG ACAAACCGCT GCCCGTGCTG
CGCTTGGTGT TCGGCGACCC GCACGCCAGC TGGGTGCACC TGGACCCACA CACGGGCGCA
GTGCTGGGTC GGCTGGACCG GCACCGCCGC ACCTCGCGCT GGCTGTTCGG CCTGCTGCAC
AGCTGGGACT GGCTGCCGCT GCTGCAGCGC CGGCCGTTGT GGGACGTGCT GCTGGTGGCG
CTGAGTGTGG GCGGCACGGT GATCAGCCTG AGCGGCGTCG TGCTGGGCTG GCGGCGCGTA
CGGCGCAAGC TGGGCTGGCA CACACCTGCC GCACCCCAGG CCCCGATGCG GTGA
|
|---|
| Protein sequence | MVHAKRWLFL VHRWLGVLLC AFFAMWFVSG VVMMYVGYPK LTPAERLMHL PPLRGAAVAL
EPDQALAAAG LQGPLRDLRL AVASGGRAVY LATPQPSKAA PPGDARPRGA PVVIDARTGA
VLMAVDAPRA LASAAAYAQG PAHAVHEGRL QEDAFTHSRA LDMHRPLHRV RLGDAHDTVL
YISGTTGEVV RDATRTERQW NYAGAWLHWL YPLRGGLVDR YWADIVNALS LLGIAAVVTG
GVIGILRWRF AGTYRSGRRT PFPSAWARWH HVAGLLFMVV TLAWIFSGLM SMNPWRIFDS
GAPALRTNAM HGGPLQLPHA GAPVAALLQA APTDTRELRW TRTAGHTLVQ ALPASGPPTV
LDAHTALPHA WQPGELEAAA ARLVDAPLQR VETLRAYDAY YYTRDAHTMT GGTDKPLPVL
RLVFGDPHAS WVHLDPHTGA VLGRLDRHRR TSRWLFGLLH SWDWLPLLQR RPLWDVLLVA
LSVGGTVISL SGVVLGWRRV RRKLGWHTPA APQAPMR
|
|---|
| |