| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2218 |
|---|
| Symbol | |
|---|
| ID | 4673756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 2351304 |
|---|
| End bp | 2353832 |
|---|
| Gene Length | 2529 bp |
|---|
| Protein Length | 842 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 639839287 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_986459 |
|---|
| Protein GI | 121594563 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000600865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.100568 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAGT TCCCAAGAGC CTTTCTATCT CACGGACATG TTGACAAACA TATAGTGAGA
GAAGTTGCGC GCAATCTCGG GCGCGCAGCC GTCATTTACG ACGAGTTCGA GTTTTCGGTT
GGCGATGAAT TCCGTGATGC CATCATCAAA GGCATCGATC GATCAGATGT ATTTATTCTG
TTTGCAAGCC GGGCCTCGCT CCAACGAGAT TGGGTTAAAT TAGAAATAGA ACTCGCTTCC
GAAGCGCTCA TCAAGAATGC ACTCAGTAAG GTGACAACCT ATATCGTTGA TCAGGAGCTA
ACCCACGACG ACCTTCCTGA ATGGATGCGG GCAACGCTCA TCAGGAAAGA GGCATCGCCG
GGTCTGATCG CCACCGACAT CCGGCGTATC ATCAGTCAAC GTCTTGGAGA GCGCATTCCG
AGATACTTTG TCGGACGTAG GGCTGAGATC GAGCAATCGC TCGAAACCAT ATCAGGCTTC
ACAGATCCCA ATTTCCGCCC GCCTCTAATC GTTTACGGCC TAAAGGGTAT CGGCAGACGC
TCGCTTGTCC AAGCGATTGC ACGCGACAAC CTATCCTTTG CCTCAATATT GCCAATTAAC
CTCCACGCGG GCGATCTCTT GCCTGAGACA TCGATCCGCG TCGCCGAAGC GATTTCACCA
GGGGGTATCT CCGACTTGGT GGCTTTTCTG AAGCAGCAAG AGCAAAAAGC GAAGGAGAAC
TTGGTCGACG AGATAACCTC TCTGTTGCGT CAGGCCTGCC AAGCGGGGAC GTTGCCGATA
TTTGTCGACG AAGGCGCCCT AGCCGCCGAG AATGGCGTGA TGAGACCCGA GTTCGATGCG
CTGTACAACG CGATTTCGTC TGATCGGGAT ACTGACGCCA TGATCGTTTC AAGCAGGAGG
CTGTATCGAC CTGCCGAAAA CCCGTGCCCG TCCGTGCGCG TCCCCGAACT TGATCAAACA
TCAACGCAGA ATCTGTTGCG TATCGCCGGA CGCGACGTCG GCTTGGTATT CGATCGAACC
GCGCTTACGG CAATCGCAAC CTACGCTCGT GGCTATCCTC CCGCTGTACG ATTTATTCTT
GATGAGGCTC GGCTTCGCGG AATCTCGCAA GTCGTAACTG ATCAACGTGC ATTGGTGAAT
TTTAATGCCG AACAGTTTCT CCGGCACTTA AGGGAGAACA GATCGCTAAC ACCGAGCATG
CAGACGATCC TGCAGATCCT ATCAAGCTTC AGCCCTCTCC CACTTCAGGT CATTGTGGCG
TACTGCGCGC AAACGTCACA CGATACAAGC GATGATCTGA ACTTCTTACT TGACCTCGCG
TTTGTTATGC CTGCCGGAAT GCACTATCGC ATCTCAGAGC CCATCCGTGA TGCAGCATAC
AGAGCATTTG GCGGACTTCG CGTCGATACC AGGAAAGTGG CCGAGCTTCT TGAAGCGTAC
CTGGCAGATG AGCCTGACGA TGACGCACGA CTTGATCTCG GGCAAACGAT TTTCCGAGCC
AACCTCCTTG CAGGAAGCCA GGCTGACTCT CGATTCGCGA TTGGATTTGC CGCAGATCTG
ATCAACGTAG CAACTAGGAG CTATCACGAT CAAGACTACG ACCTCGCTAT CAAGTACGGT
TCGTCTGCCT TGGACGTGCG GCCCGATAGC GTTGATGTAC GACGCTATGT CGCGCAAGCT
CTCATTCGGA AAGAGCGATA TGATGAAGCA GAGCAGCATA TCAGCGAGCT GCTTCGCCTC
GGTGAACTTA AGGAGGCGTA CTACGTGCGG GGCTTCGCCG CGCGACGGAA GCGAGAGTAT
CCTGAAGCGA TCGAGGCTTA CAAGAAGAGT CTCGCCAATG GCCGCCGAGG CGTCGCCATC
CACCGGGAAC TGGCAAGCTG CTTTTTTGAA ACGGGGGATC TTCCAGCCGC CGAAGAGTAT
ATTCGTCAGG CCGAGCAGCA GTCTCCGCAT AACCCATATG TAGTTGATTT GAAATGCACG
ATTGCGCTTA GGCTTGGCGA TCTCCCTACT GCTGAGCGCG CCCTTGAGAT CCTTGACCGC
ATTGATTCAA GTGGATTCGC TGAGCATCGC CGCTCCACCT TCGAACAAGC AAACGGGAGC
CCTGAGGATG CACTACGCTT CGCCCGTATC GCTGACCAAA AGATAGCCCA CCCTCCCTTT
GAGGTTCTCG CCAATTTAGC GAACTGCGAG ATCGAGGCAG GAGAGTGCGA AGGCGCTTTG
ACCACGCTCG GGCGACTTCA GAAACGATTT GGTGCCATCA ACCACGACGC TCAGGTTGGG
CTACGGTGCA AATACGAAAT CCGATTTGGT GAGGTCGAAG CCGCTGAAGG ACTCTGGAGT
CGGCTTCGCG ACACAAGTAC GCCCGTTCAC CGAGGCCTTC GTCTGGCGAT ACTGAACCGC
AAGCAAGCGC AGAGTGGACT GACGGTCGAA GAAGACGCCG AACGAACTCA GCTGATCGAG
TATCAATCGA CGGCAGAGCT TGAGCGTAAC ATGCGGTTAA TCGGCTCAAT GATGTCTCAA
TCTGAATAA
|
|---|
| Protein sequence | MTKFPRAFLS HGHVDKHIVR EVARNLGRAA VIYDEFEFSV GDEFRDAIIK GIDRSDVFIL
FASRASLQRD WVKLEIELAS EALIKNALSK VTTYIVDQEL THDDLPEWMR ATLIRKEASP
GLIATDIRRI ISQRLGERIP RYFVGRRAEI EQSLETISGF TDPNFRPPLI VYGLKGIGRR
SLVQAIARDN LSFASILPIN LHAGDLLPET SIRVAEAISP GGISDLVAFL KQQEQKAKEN
LVDEITSLLR QACQAGTLPI FVDEGALAAE NGVMRPEFDA LYNAISSDRD TDAMIVSSRR
LYRPAENPCP SVRVPELDQT STQNLLRIAG RDVGLVFDRT ALTAIATYAR GYPPAVRFIL
DEARLRGISQ VVTDQRALVN FNAEQFLRHL RENRSLTPSM QTILQILSSF SPLPLQVIVA
YCAQTSHDTS DDLNFLLDLA FVMPAGMHYR ISEPIRDAAY RAFGGLRVDT RKVAELLEAY
LADEPDDDAR LDLGQTIFRA NLLAGSQADS RFAIGFAADL INVATRSYHD QDYDLAIKYG
SSALDVRPDS VDVRRYVAQA LIRKERYDEA EQHISELLRL GELKEAYYVR GFAARRKREY
PEAIEAYKKS LANGRRGVAI HRELASCFFE TGDLPAAEEY IRQAEQQSPH NPYVVDLKCT
IALRLGDLPT AERALEILDR IDSSGFAEHR RSTFEQANGS PEDALRFARI ADQKIAHPPF
EVLANLANCE IEAGECEGAL TTLGRLQKRF GAINHDAQVG LRCKYEIRFG EVEAAEGLWS
RLRDTSTPVH RGLRLAILNR KQAQSGLTVE EDAERTQLIE YQSTAELERN MRLIGSMMSQ
SE
|
|---|
| |