| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2089 |
|---|
| Symbol | |
|---|
| ID | 4671817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 2209472 |
|---|
| End bp | 2211313 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639839167 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_986341 |
|---|
| Protein GI | 121594445 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.240835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.548232 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTGTTTC GGTTGTTCGA AAATCGTGTC CCCCCGTACC CTGCGGCCGA GCCGACCGTG
CCGCCCGCCG GGTTCCTCGC CTTCGTGTGG GCCAGCACGC GCGGCCTGCG CGGCTATGTC
GGGGCCATGG CCGCCCTGTC TGCCGTGGTG GCCATCTACG AGGCGCTGCT GTTTGCCGTG
CTGGGACGGG TGGTGGACTG GATCGCCGCC ACTGCGCCCG AGCGCTTCTG GGCCGAGCGC
GGCACGCTGC TCGCCGGGGT GGCTGCGGTG CTGGTCGCCA GCATTGGCAT AGTGGCGCTG
CAGACCACCG TGCGCCACCA GGTGCTGGCC ATCAACTTCC CGCTGCGCCT GCGTTGGAAC
TTCCACCGGC TGATGCTGGG CCAAAGCATG GCGTTCTATG CAGACGAGTT CGCGGGCCGC
ATCACCACCA AGATCATGCA GACCGCGCTG GCCGTGCGCG ACATGATCTT TACCACCTGC
GACGTGGCGA TCGGCATGGG CGTCTACCTG GTCACCATCC TGGCACTGGC GGGCGGCTTT
GAATGGCGGC TGCTGCTGCC CTTCCTGGCG TGGGCGCTGA GCTACGCGGC CGCGTGCTGG
TACTTCGTGC CACGCCTGGG CCAGGTGAGC AAGGCCCAGG CCGACGCGCG CTCCGTCATG
ACCGGCCGCG TGACGGACGC TTACACCAAC ATCGCCACGG TGAAGCTGTT CTCGCACACG
CGGCGCGAGG CCGAGTTTGC CCGCGCGGCG ATGGACGCGT TCAAGACCAC GGGCTACGCA
CAGATGCGGC TGGTCAGCCG CTTCGAGATC GTGAACCACG CCCTGGTGGT GGGCATGATC
CTCGGTGCCT GCGGCACGGC GCTATGGCTG TGGTCGCGGG GCGAGGTAGG CGCCGGCGCG
GTGGCCGCGG TGACCGCCAT GGCACTGCGC GTTTCAGGCC ACGCCCACTG GGTGATGTGG
GAGATGACCA CGCTGTTCGA GAGCGTGGGC ACCATCCAGG ACGGCATCAA CACCCTCACC
CGCCCGCGCA CGGTGGTGGA TGCGCCCGAT GCCCGCCCGT TGCAGGTCAC GCGTGGCGAG
GTGCAGTTTG AGAACGTGCG CTTCGGCTAC CGCGACGGCG CGGCAGTGAT CGACGGGCTG
AACCTCACCA TCCGCCCAGG CGAGCGCATC GGGCTGATCG GCCGATCCGG CGCGGGCAAG
TCCACGCTGG TCAACCTGCT GCTGCGCTTT CATGACGTGC AGGGCGGACG CATTCTGGTG
GACGGGCAGG ACATCGCCCA CGTCACGCAG GACAGCCTGC GCCAAGCGAT CGGCATGGTC
ACGCAGGACA CTTCGCTGCT GCACCGATCG ATGCGCGACA ACATCCTGTA CGGCCGCCCC
GATGCCTCCG AGGAAGACAT GCGCCTGGCT GCCGAACGCG CCGAGGCCGC GCAATTCATC
GACGAGCTGA CCGACCTGCA GGGCCGCAGC GGCTACGACG CCCAGGTAGG CGAGCGCGGC
GTCAAGCTTT CGGGCGGGCA GCGCCAGCGC GTGGCGATCG CACGCGTGAT GCTCAAGGAC
GCCCCGATCC TGCTGCTGGA CGAGGCTACC AGTGCGCTGG ACTCCGAGGT GGAGGCTGCC
ATCCAGCAGA GCCTGGACGG ACTGATGCGG GGCAAGACGG TGATCGCCAT CGCGCACCGC
CTGTCCACCA TCGCCGCCAT GGACCGGCTC ATCGTGCTGG ACGCCGGCCG CATCGTCGAG
GAAGGCACGC ACGCACAGCT GCTGGCGCAA GGGGGTGTCT ATGCGCGGCT GTGGACGCAC
CAGAGTGGCG GCTTCATGGG ACAGGACCCG GACGAGGCCT GA
|
|---|
| Protein sequence | MLFRLFENRV PPYPAAEPTV PPAGFLAFVW ASTRGLRGYV GAMAALSAVV AIYEALLFAV
LGRVVDWIAA TAPERFWAER GTLLAGVAAV LVASIGIVAL QTTVRHQVLA INFPLRLRWN
FHRLMLGQSM AFYADEFAGR ITTKIMQTAL AVRDMIFTTC DVAIGMGVYL VTILALAGGF
EWRLLLPFLA WALSYAAACW YFVPRLGQVS KAQADARSVM TGRVTDAYTN IATVKLFSHT
RREAEFARAA MDAFKTTGYA QMRLVSRFEI VNHALVVGMI LGACGTALWL WSRGEVGAGA
VAAVTAMALR VSGHAHWVMW EMTTLFESVG TIQDGINTLT RPRTVVDAPD ARPLQVTRGE
VQFENVRFGY RDGAAVIDGL NLTIRPGERI GLIGRSGAGK STLVNLLLRF HDVQGGRILV
DGQDIAHVTQ DSLRQAIGMV TQDTSLLHRS MRDNILYGRP DASEEDMRLA AERAEAAQFI
DELTDLQGRS GYDAQVGERG VKLSGGQRQR VAIARVMLKD APILLLDEAT SALDSEVEAA
IQQSLDGLMR GKTVIAIAHR LSTIAAMDRL IVLDAGRIVE EGTHAQLLAQ GGVYARLWTH
QSGGFMGQDP DEA
|
|---|
| |