Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_2080 |
Symbol | |
ID | 4671181 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 2193360 |
End bp | 2194562 |
Gene Length | 1203 bp |
Protein Length | 400 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639839158 |
Product | major facilitator superfamily transporter |
Protein accession | YP_986332 |
Protein GI | 121594436 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.592815 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGACGC CGCGCCAACC CTCGCCAGCG CGCATCCCCG CCGCCGTATG GGCGCTGGGC CTGGTGAGCA TGCTGATGGA CATCTCGTCC GAGATGATCC ACAGCCTGTT GCCGATGTTC ATGGTGGGCG CGCTGGGCAT GTCGGCCTTC GCGGTGGGCC TCATCGAAGG TCTGGCAGAA GCCACGGCGC TGATCGTCAA GGTGTTCTCG GGCACGCTCA GCGACTATCT TGGCAGGCGC AAGGGGCTGG CGTTGCTGGG CTATGGGCTG GGGGCGGTCA CCAAGCCGCT CTTCGCGCTG GCTTCGGGCG CCGGCTTGAT CGTGACGGCG CGCCTGATCG ATCGTGTGGG CAAAGGCATC CGCGGCGCAC CGCGCGATGC GCTGGTGGCC GACGTGACCC CGCCGGAGAT TCGCGGTGCC GCGTTCGGCC TGCGCCAGTC ACTGGACACG GTGGGCGCCT TCGTCGGGCC GCTGCTGGCC GTGGGCCTGA TGCTGCTGTG GGCCAACGAC TTTCGCGCCG TGTTCTGGGT GGCGGTAGTG CCGGGCGTGC TGTCGGTGGC CGTGCTGGCC TGGGGCGTGC GCGAGCCTGC GTCCCAAGGG GGCGTGCGCC GCACCAATCC CATCCGGCGC GAGAACATCC GCCGCCTGGG GCCCGCCTAT TGGTGGGTGG TGGCCGTGGG TGCGGTGTTC ACGCTGGCAC GTTTCAGCGA AGCCTTCCTG GTGCTGCGCG CCCAGAACAT CGGCATACCC ATGGCACTCG TGCCCCTGGT GATGGTGGCC ATGAACCTGG TGTATGCGGC GGCGGCCTAT CCATTTGGCA AGCTGTCGGA CCGCGTGAGC CACACGCGGC TGCTGGCCTG GGGCCTGGTG GTGCTGATCC TGTCGGACGT GCTGCTCGCA ACGGCCCAGC ACTGGACCCT GGTGATTGCC GGCGTGGCCG TATGGGGCAT TCACATGGGC ATGACGCAGG GCCTGCTGTC GGCCATGGTG GCGGATGCGA CTCCGGCCGA CCTGCGCGGC ACGGCCTATG GCGTGTTCCA CCTGGCCAGC GGTTTGGCCA TGCTGGTGGC CAGCGCGGTG GCTGGGTTGC TGTGGGATGC CGTGGGGCCG GCGGCCACGT TCTGGGCCGG CGGTGTGTTT GCGGCGCTGT GCCTTGCGGG TCTCCGTTGG CGCAGCGCAG GGGCTGGCCG CTTGCTCAGG TGA
|
Protein sequence | MQTPRQPSPA RIPAAVWALG LVSMLMDISS EMIHSLLPMF MVGALGMSAF AVGLIEGLAE ATALIVKVFS GTLSDYLGRR KGLALLGYGL GAVTKPLFAL ASGAGLIVTA RLIDRVGKGI RGAPRDALVA DVTPPEIRGA AFGLRQSLDT VGAFVGPLLA VGLMLLWAND FRAVFWVAVV PGVLSVAVLA WGVREPASQG GVRRTNPIRR ENIRRLGPAY WWVVAVGAVF TLARFSEAFL VLRAQNIGIP MALVPLVMVA MNLVYAAAAY PFGKLSDRVS HTRLLAWGLV VLILSDVLLA TAQHWTLVIA GVAVWGIHMG MTQGLLSAMV ADATPADLRG TAYGVFHLAS GLAMLVASAV AGLLWDAVGP AATFWAGGVF AALCLAGLRW RSAGAGRLLR
|
| |