Gene Ajs_2080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_2080 
Symbol 
ID4671181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp2193360 
End bp2194562 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content69% 
IMG OID639839158 
Productmajor facilitator superfamily transporter 
Protein accessionYP_986332 
Protein GI121594436 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.592815 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGACGC CGCGCCAACC CTCGCCAGCG CGCATCCCCG CCGCCGTATG GGCGCTGGGC 
CTGGTGAGCA TGCTGATGGA CATCTCGTCC GAGATGATCC ACAGCCTGTT GCCGATGTTC
ATGGTGGGCG CGCTGGGCAT GTCGGCCTTC GCGGTGGGCC TCATCGAAGG TCTGGCAGAA
GCCACGGCGC TGATCGTCAA GGTGTTCTCG GGCACGCTCA GCGACTATCT TGGCAGGCGC
AAGGGGCTGG CGTTGCTGGG CTATGGGCTG GGGGCGGTCA CCAAGCCGCT CTTCGCGCTG
GCTTCGGGCG CCGGCTTGAT CGTGACGGCG CGCCTGATCG ATCGTGTGGG CAAAGGCATC
CGCGGCGCAC CGCGCGATGC GCTGGTGGCC GACGTGACCC CGCCGGAGAT TCGCGGTGCC
GCGTTCGGCC TGCGCCAGTC ACTGGACACG GTGGGCGCCT TCGTCGGGCC GCTGCTGGCC
GTGGGCCTGA TGCTGCTGTG GGCCAACGAC TTTCGCGCCG TGTTCTGGGT GGCGGTAGTG
CCGGGCGTGC TGTCGGTGGC CGTGCTGGCC TGGGGCGTGC GCGAGCCTGC GTCCCAAGGG
GGCGTGCGCC GCACCAATCC CATCCGGCGC GAGAACATCC GCCGCCTGGG GCCCGCCTAT
TGGTGGGTGG TGGCCGTGGG TGCGGTGTTC ACGCTGGCAC GTTTCAGCGA AGCCTTCCTG
GTGCTGCGCG CCCAGAACAT CGGCATACCC ATGGCACTCG TGCCCCTGGT GATGGTGGCC
ATGAACCTGG TGTATGCGGC GGCGGCCTAT CCATTTGGCA AGCTGTCGGA CCGCGTGAGC
CACACGCGGC TGCTGGCCTG GGGCCTGGTG GTGCTGATCC TGTCGGACGT GCTGCTCGCA
ACGGCCCAGC ACTGGACCCT GGTGATTGCC GGCGTGGCCG TATGGGGCAT TCACATGGGC
ATGACGCAGG GCCTGCTGTC GGCCATGGTG GCGGATGCGA CTCCGGCCGA CCTGCGCGGC
ACGGCCTATG GCGTGTTCCA CCTGGCCAGC GGTTTGGCCA TGCTGGTGGC CAGCGCGGTG
GCTGGGTTGC TGTGGGATGC CGTGGGGCCG GCGGCCACGT TCTGGGCCGG CGGTGTGTTT
GCGGCGCTGT GCCTTGCGGG TCTCCGTTGG CGCAGCGCAG GGGCTGGCCG CTTGCTCAGG
TGA
 
Protein sequence
MQTPRQPSPA RIPAAVWALG LVSMLMDISS EMIHSLLPMF MVGALGMSAF AVGLIEGLAE 
ATALIVKVFS GTLSDYLGRR KGLALLGYGL GAVTKPLFAL ASGAGLIVTA RLIDRVGKGI
RGAPRDALVA DVTPPEIRGA AFGLRQSLDT VGAFVGPLLA VGLMLLWAND FRAVFWVAVV
PGVLSVAVLA WGVREPASQG GVRRTNPIRR ENIRRLGPAY WWVVAVGAVF TLARFSEAFL
VLRAQNIGIP MALVPLVMVA MNLVYAAAAY PFGKLSDRVS HTRLLAWGLV VLILSDVLLA
TAQHWTLVIA GVAVWGIHMG MTQGLLSAMV ADATPADLRG TAYGVFHLAS GLAMLVASAV
AGLLWDAVGP AATFWAGGVF AALCLAGLRW RSAGAGRLLR