Gene Ajs_2061 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_2061 
Symbol 
ID4671595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp2170312 
End bp2173014 
Gene Length2703 bp 
Protein Length900 aa 
Translation table11 
GC content69% 
IMG OID639839139 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) 
Protein accessionYP_986313 
Protein GI121594417 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.130432 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0846587 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAAG AGGTGGCTGC CCCGAGGGGG TTCGCACAGC ACTGGGCCCC ATGGCATCCG 
GGCATGATTG CAGCAGTGGT GCTTTCACTG CTGCTGCTCG CCGTCACCTA TCTGGTCTGG
CAGGGCGTGG AGCGCGCACG GGACGAGCGC CGGCTGCAGG CTTTCGCCTT GTCCGTGGAC
CGCGTGGTTT CCAACCTGTC GGACCGCATC GCCGCCTACG AAATGGTGTT GCGTGGCGCC
AAGGGCTACT ACGAAGGCTC CGACAGCATC GACCAGCAGG AATTCCAGGC CTACGTGGAG
GCCTTGCACC TGCCGCAGAC GCGCCCGGGC CTGCAGGGGG TGGCGCTGCT GTCGCGCGTG
GCGGAATCCA CCGGGGCGCG CACGGGGCAG GCGTTGATCA CGCACATCGC ACCCCAAACG
CCGGAAAACC AGCAGGAATT GGGACAGGAT GCCATGCTGC AGCCGGCGCG GCGCGAGGCG
CTGCTGCGCG CGCGCGACTC CGGGACGCTG GCGCTGTCGG GCCCGCTGGG CAGCCGCGAA
GGGAATGCCG GCAGCTCCCT GGTCATGTAC CTGCCGCTGT ATGCCAGACA CGCTGCCGTG
GGCACTCTGG CCCAGCGCCG CCAGAACATT GCAGGCTGGG TGGCCGCGCC ATTTCGCATG
GACGACGTAA TCCAGGGCCT GGCGCGCGAG CTGGACAGCG ACCTTGCGCT GGCCATCCAT
GACGGCCCCT CGGTGGCAGG TGGGGTGCTC GTGTTTGCGT CGCGCACGGA CTATGCACCC
CACGCGGTCA ATGGCGGGCT GGAGGCCGTG CGCAGCTACG ACGTAGGCGG CAGGCGCTGG
ACGCTGGTGC TGTACCCGCT GCCCTCATTC GAGCAGCGCT TCGAAGGATC CACACACCAT
CTGGTTGCCC TGCTGGGCGC CGCCTTCAGC CTGCTGGCGG GATGGTTCGT GGGGCAGCAG
GTGAACGCGC GACAGCGGGC CATGGCGCTG GCCCGCGAGA TGACGCGCGA GTTGCGCCGC
ACGCGCGATG AGCTGGAAGC CACACTCAAT GCCGTGCCCG ATCTACTGTT CGAGGTGGAC
GCACAGGGAG GCATCCACCA CTACCGGTCC GCCCGCGCGG ACCTGATCGG CACGCGCGCC
CAGGCGCTGG TGGGGCGCAC GCTGGGGGAT GTGTTGCCGC CCGCTGCCGC CGCCGAATGC
ATGGCTGCGC TGGACGAGGC GGCCGAGTAC GGTTATTCCG AAGGGCGGCA GTACAGCCTG
GACATCGGGG GCAGCCAGCA TTGGTTCGAG CTATCCGTGG CCTGCAAGCA GGGGGGGGCG
CCGCAGACCG GGGCCGGCCC GGGCCAGCGC CACTTCATCG CGCTGTCGCG CGACGTCACG
CGGCGCCACG AAGCCGAGGC CGCCATGTAC CGGCTCGCGT ATTTCGACGC GCTCACCGGC
CTGCCCAACC GCCGCCTGCT GCTGCAGCGC TTGCAGGATG CACTGGTCAC GGCCCAGCAG
CAGGGGGGCA TGGGCGCGCT GTTCTACATC GACCTGGACA ACTTCAAGGA GATCAACGAC
GCGCGCGGCC ACGGTGTAGG CGACGGGCTG CTGGTGCAGG TCGCCGCGCG CCTGCAGGAC
GCGGCCGGGC CGCAGGAGAC CGTGGCACGG CTGGGGAGCG ACGAATTCGT CCTGCTGGTG
CCGCGGCTGG GCGACGGCCC CTCTGTTGCG CGTGAGCAGG CCTGCCGGCG CGCCCAGCAG
CTGCGCGAAT GCCTGGATGC GCCCTATGAC CTGGGCGGGG TGCACTACGG CAGTACCGGC
AGCATCGGCG TGACGCTGTT TCCCAAGAAC GGTGAGGGCG TGGAAGACCT GCTGCGCGAG
GCCGACACGG CCATGTTCTG TGCCAAGGAC CGGGGGCGCA ACCAGGTGTG CTTCTTTGAG
CAGGACATGC ACGCCGCAGC GCAGGAGCGC CTGGCGCTCC TGCAGGACCT CAAGAGCGCG
GTCGACAACG ACGCGCTGCT GACCTATGCG CAGCCGCAGG TGGATGCCGC CGGCCAGCTC
ATCGGCGCGG AGCTGCTGCT GCGCTGGCCG CATCCGCAGC GCGGCTTCGT GCCGCCGGCG
CAGTTCATCC CGGTGGCGGA ACAGGCGGGG TTGATTGTGC GCATGGGTGC GCGTGTCATC
CAGCAGGCCT GCGCCACGCT GGCCGAACTG CACCAGCAGG GCCGGGCGCT GTCGATCTCG
GTCAATGTCA GCCCCCGCCA GTTCCGTCAG GCGGACTTCG TGGAGCAGGT GCGCGCGGCG
CTGCAAAGCA CGGGCGCGCC CGCGGCGCTG CTCACGCTGG AGGTTACGGA AAGCCTGCTG
GTGGAGAACT GGCAGGACAC CGCCCGGCGC ATGCACGAGC TGGTGGCGCT GGGCGTGCGC
TTTTCCATCG ATGACTTCGG CACCGGCTAC TCCAGCCTGG CGTATCTGAA GCGCCTGCCG
CTGTACGAAC TCAAGATCGA CCGCAGCTTC GTGCAGGACG CGCCCTCCGA TGCGAACGAC
GCGGCGATCG TGCAGGCCAT TCTTTCGGTC GCGCGCCACT TGCGCCTGCG CGTGGTGGCC
GAGGGGGTAG AGACGCGGCA GCAGGCGGAC TTCCTCATCG CCCACCACTG CCATGGCCTG
CAGGGCTATC TGTTCGGGCT GCCGCAGCCA CTGCGGGACT GGCTGGCGGG CCTCAAAGGC
TGA
 
Protein sequence
MNKEVAAPRG FAQHWAPWHP GMIAAVVLSL LLLAVTYLVW QGVERARDER RLQAFALSVD 
RVVSNLSDRI AAYEMVLRGA KGYYEGSDSI DQQEFQAYVE ALHLPQTRPG LQGVALLSRV
AESTGARTGQ ALITHIAPQT PENQQELGQD AMLQPARREA LLRARDSGTL ALSGPLGSRE
GNAGSSLVMY LPLYARHAAV GTLAQRRQNI AGWVAAPFRM DDVIQGLARE LDSDLALAIH
DGPSVAGGVL VFASRTDYAP HAVNGGLEAV RSYDVGGRRW TLVLYPLPSF EQRFEGSTHH
LVALLGAAFS LLAGWFVGQQ VNARQRAMAL AREMTRELRR TRDELEATLN AVPDLLFEVD
AQGGIHHYRS ARADLIGTRA QALVGRTLGD VLPPAAAAEC MAALDEAAEY GYSEGRQYSL
DIGGSQHWFE LSVACKQGGA PQTGAGPGQR HFIALSRDVT RRHEAEAAMY RLAYFDALTG
LPNRRLLLQR LQDALVTAQQ QGGMGALFYI DLDNFKEIND ARGHGVGDGL LVQVAARLQD
AAGPQETVAR LGSDEFVLLV PRLGDGPSVA REQACRRAQQ LRECLDAPYD LGGVHYGSTG
SIGVTLFPKN GEGVEDLLRE ADTAMFCAKD RGRNQVCFFE QDMHAAAQER LALLQDLKSA
VDNDALLTYA QPQVDAAGQL IGAELLLRWP HPQRGFVPPA QFIPVAEQAG LIVRMGARVI
QQACATLAEL HQQGRALSIS VNVSPRQFRQ ADFVEQVRAA LQSTGAPAAL LTLEVTESLL
VENWQDTARR MHELVALGVR FSIDDFGTGY SSLAYLKRLP LYELKIDRSF VQDAPSDAND
AAIVQAILSV ARHLRLRVVA EGVETRQQAD FLIAHHCHGL QGYLFGLPQP LRDWLAGLKG