| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2061 |
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| Symbol | |
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| ID | 4671595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 2170312 |
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| End bp | 2173014 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639839139 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_986313 |
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| Protein GI | 121594417 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.130432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0846587 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAG AGGTGGCTGC CCCGAGGGGG TTCGCACAGC ACTGGGCCCC ATGGCATCCG
GGCATGATTG CAGCAGTGGT GCTTTCACTG CTGCTGCTCG CCGTCACCTA TCTGGTCTGG
CAGGGCGTGG AGCGCGCACG GGACGAGCGC CGGCTGCAGG CTTTCGCCTT GTCCGTGGAC
CGCGTGGTTT CCAACCTGTC GGACCGCATC GCCGCCTACG AAATGGTGTT GCGTGGCGCC
AAGGGCTACT ACGAAGGCTC CGACAGCATC GACCAGCAGG AATTCCAGGC CTACGTGGAG
GCCTTGCACC TGCCGCAGAC GCGCCCGGGC CTGCAGGGGG TGGCGCTGCT GTCGCGCGTG
GCGGAATCCA CCGGGGCGCG CACGGGGCAG GCGTTGATCA CGCACATCGC ACCCCAAACG
CCGGAAAACC AGCAGGAATT GGGACAGGAT GCCATGCTGC AGCCGGCGCG GCGCGAGGCG
CTGCTGCGCG CGCGCGACTC CGGGACGCTG GCGCTGTCGG GCCCGCTGGG CAGCCGCGAA
GGGAATGCCG GCAGCTCCCT GGTCATGTAC CTGCCGCTGT ATGCCAGACA CGCTGCCGTG
GGCACTCTGG CCCAGCGCCG CCAGAACATT GCAGGCTGGG TGGCCGCGCC ATTTCGCATG
GACGACGTAA TCCAGGGCCT GGCGCGCGAG CTGGACAGCG ACCTTGCGCT GGCCATCCAT
GACGGCCCCT CGGTGGCAGG TGGGGTGCTC GTGTTTGCGT CGCGCACGGA CTATGCACCC
CACGCGGTCA ATGGCGGGCT GGAGGCCGTG CGCAGCTACG ACGTAGGCGG CAGGCGCTGG
ACGCTGGTGC TGTACCCGCT GCCCTCATTC GAGCAGCGCT TCGAAGGATC CACACACCAT
CTGGTTGCCC TGCTGGGCGC CGCCTTCAGC CTGCTGGCGG GATGGTTCGT GGGGCAGCAG
GTGAACGCGC GACAGCGGGC CATGGCGCTG GCCCGCGAGA TGACGCGCGA GTTGCGCCGC
ACGCGCGATG AGCTGGAAGC CACACTCAAT GCCGTGCCCG ATCTACTGTT CGAGGTGGAC
GCACAGGGAG GCATCCACCA CTACCGGTCC GCCCGCGCGG ACCTGATCGG CACGCGCGCC
CAGGCGCTGG TGGGGCGCAC GCTGGGGGAT GTGTTGCCGC CCGCTGCCGC CGCCGAATGC
ATGGCTGCGC TGGACGAGGC GGCCGAGTAC GGTTATTCCG AAGGGCGGCA GTACAGCCTG
GACATCGGGG GCAGCCAGCA TTGGTTCGAG CTATCCGTGG CCTGCAAGCA GGGGGGGGCG
CCGCAGACCG GGGCCGGCCC GGGCCAGCGC CACTTCATCG CGCTGTCGCG CGACGTCACG
CGGCGCCACG AAGCCGAGGC CGCCATGTAC CGGCTCGCGT ATTTCGACGC GCTCACCGGC
CTGCCCAACC GCCGCCTGCT GCTGCAGCGC TTGCAGGATG CACTGGTCAC GGCCCAGCAG
CAGGGGGGCA TGGGCGCGCT GTTCTACATC GACCTGGACA ACTTCAAGGA GATCAACGAC
GCGCGCGGCC ACGGTGTAGG CGACGGGCTG CTGGTGCAGG TCGCCGCGCG CCTGCAGGAC
GCGGCCGGGC CGCAGGAGAC CGTGGCACGG CTGGGGAGCG ACGAATTCGT CCTGCTGGTG
CCGCGGCTGG GCGACGGCCC CTCTGTTGCG CGTGAGCAGG CCTGCCGGCG CGCCCAGCAG
CTGCGCGAAT GCCTGGATGC GCCCTATGAC CTGGGCGGGG TGCACTACGG CAGTACCGGC
AGCATCGGCG TGACGCTGTT TCCCAAGAAC GGTGAGGGCG TGGAAGACCT GCTGCGCGAG
GCCGACACGG CCATGTTCTG TGCCAAGGAC CGGGGGCGCA ACCAGGTGTG CTTCTTTGAG
CAGGACATGC ACGCCGCAGC GCAGGAGCGC CTGGCGCTCC TGCAGGACCT CAAGAGCGCG
GTCGACAACG ACGCGCTGCT GACCTATGCG CAGCCGCAGG TGGATGCCGC CGGCCAGCTC
ATCGGCGCGG AGCTGCTGCT GCGCTGGCCG CATCCGCAGC GCGGCTTCGT GCCGCCGGCG
CAGTTCATCC CGGTGGCGGA ACAGGCGGGG TTGATTGTGC GCATGGGTGC GCGTGTCATC
CAGCAGGCCT GCGCCACGCT GGCCGAACTG CACCAGCAGG GCCGGGCGCT GTCGATCTCG
GTCAATGTCA GCCCCCGCCA GTTCCGTCAG GCGGACTTCG TGGAGCAGGT GCGCGCGGCG
CTGCAAAGCA CGGGCGCGCC CGCGGCGCTG CTCACGCTGG AGGTTACGGA AAGCCTGCTG
GTGGAGAACT GGCAGGACAC CGCCCGGCGC ATGCACGAGC TGGTGGCGCT GGGCGTGCGC
TTTTCCATCG ATGACTTCGG CACCGGCTAC TCCAGCCTGG CGTATCTGAA GCGCCTGCCG
CTGTACGAAC TCAAGATCGA CCGCAGCTTC GTGCAGGACG CGCCCTCCGA TGCGAACGAC
GCGGCGATCG TGCAGGCCAT TCTTTCGGTC GCGCGCCACT TGCGCCTGCG CGTGGTGGCC
GAGGGGGTAG AGACGCGGCA GCAGGCGGAC TTCCTCATCG CCCACCACTG CCATGGCCTG
CAGGGCTATC TGTTCGGGCT GCCGCAGCCA CTGCGGGACT GGCTGGCGGG CCTCAAAGGC
TGA
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| Protein sequence | MNKEVAAPRG FAQHWAPWHP GMIAAVVLSL LLLAVTYLVW QGVERARDER RLQAFALSVD
RVVSNLSDRI AAYEMVLRGA KGYYEGSDSI DQQEFQAYVE ALHLPQTRPG LQGVALLSRV
AESTGARTGQ ALITHIAPQT PENQQELGQD AMLQPARREA LLRARDSGTL ALSGPLGSRE
GNAGSSLVMY LPLYARHAAV GTLAQRRQNI AGWVAAPFRM DDVIQGLARE LDSDLALAIH
DGPSVAGGVL VFASRTDYAP HAVNGGLEAV RSYDVGGRRW TLVLYPLPSF EQRFEGSTHH
LVALLGAAFS LLAGWFVGQQ VNARQRAMAL AREMTRELRR TRDELEATLN AVPDLLFEVD
AQGGIHHYRS ARADLIGTRA QALVGRTLGD VLPPAAAAEC MAALDEAAEY GYSEGRQYSL
DIGGSQHWFE LSVACKQGGA PQTGAGPGQR HFIALSRDVT RRHEAEAAMY RLAYFDALTG
LPNRRLLLQR LQDALVTAQQ QGGMGALFYI DLDNFKEIND ARGHGVGDGL LVQVAARLQD
AAGPQETVAR LGSDEFVLLV PRLGDGPSVA REQACRRAQQ LRECLDAPYD LGGVHYGSTG
SIGVTLFPKN GEGVEDLLRE ADTAMFCAKD RGRNQVCFFE QDMHAAAQER LALLQDLKSA
VDNDALLTYA QPQVDAAGQL IGAELLLRWP HPQRGFVPPA QFIPVAEQAG LIVRMGARVI
QQACATLAEL HQQGRALSIS VNVSPRQFRQ ADFVEQVRAA LQSTGAPAAL LTLEVTESLL
VENWQDTARR MHELVALGVR FSIDDFGTGY SSLAYLKRLP LYELKIDRSF VQDAPSDAND
AAIVQAILSV ARHLRLRVVA EGVETRQQAD FLIAHHCHGL QGYLFGLPQP LRDWLAGLKG
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