Gene Ajs_2050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_2050 
Symbol 
ID4671436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp2160751 
End bp2161761 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content64% 
IMG OID639839128 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_986302 
Protein GI121594406 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.692281 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.771105 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTATCC GCTTTGCTCT TGCCGGCCTC GTGGCCGCAC TCGTTGCCAC CGGCGCTGCA 
CAGGCGCAGG ACTTCAAGCC GCGCATCGTG CGTTTCGGCT ATGGCCTGGT GGACAACTCC
AACCAGGGCC GCGCGGCCCG CATGTTTGCG CAAGAGGTGG AAAAGGCCAC CGGTGGCAAG
ATGAAGGTGC GTGCCATTGG TAACGCCTCG CTGGGCTCCG ACACGCAGAT GCAGCAGGCG
CTGATCGGCG GCGCGCAGGA GATGATGGTG GGCTCCACCG CCACGCTGGT GGGCCTGGTG
CCGGAGATGG CCGTGTGGGA CACGCCGTTC CTCTTCAGCA ACGCCAAGGA AGCCGATGTG
GTGCTGGACG GCCCCGTGGG CGACAAGATC AAGGCCAAGC TGGAAGCCAA GGGCATGGTG
GGCCTGGTGT ACTGGGAGAA CGGTTTCCGT AACCTCACCA ACAGCAAGCG CCCCGTCGCC
AAGCTGGAAG ACCTGAGCGA CATCAAGCTG CGCGTGATGC AGAACAACGT GTTCCTCGAC
AGCTTCAAGG CCCTGGGCGC CAACGCCGTG CCGCTGCCGT TTTCCGAGCT GTTCACCGCG
TTGGAAACGC GCGCCGTGGA CGGCCAGGAG AACCCCTACA ACACCATCGT CTCCAGCAAG
TTTTACGAGG TGCAGAAGTA CCTCACGGTG ACCAACCACG TGTACAGCCC CTGGATCGTC
ACGGTGAGCA AGAAATGGTG GGACGGCCTG TCCGCCGCCG AAAAGAAGGT GCTGCAGGAC
GCCGCCATCA AGAGCCGCGA CTTCGAGCGC AAGGACACAC GTGAAGAGGC CGCCAAGGCC
CTGGCCGACC TGAAAGGCAA GGGCATGCAG GTCAACGAGC TGTCGGCCGC CGAGGCCAAC
CGCATGCGCG AAAAGCTGGT CAGCGTGAAC GCGGGCATCG CCAAGTCGGT GGGCCAGCAG
ACCTGGGACG AGGTGAACGC CGCCGTCCAG CAGGCGCGCA ACGCCAAGTA A
 
Protein sequence
MRIRFALAGL VAALVATGAA QAQDFKPRIV RFGYGLVDNS NQGRAARMFA QEVEKATGGK 
MKVRAIGNAS LGSDTQMQQA LIGGAQEMMV GSTATLVGLV PEMAVWDTPF LFSNAKEADV
VLDGPVGDKI KAKLEAKGMV GLVYWENGFR NLTNSKRPVA KLEDLSDIKL RVMQNNVFLD
SFKALGANAV PLPFSELFTA LETRAVDGQE NPYNTIVSSK FYEVQKYLTV TNHVYSPWIV
TVSKKWWDGL SAAEKKVLQD AAIKSRDFER KDTREEAAKA LADLKGKGMQ VNELSAAEAN
RMREKLVSVN AGIAKSVGQQ TWDEVNAAVQ QARNAK