| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_2017 |
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| Symbol | |
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| ID | 4672854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 2119508 |
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| End bp | 2123407 |
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| Gene Length | 3900 bp |
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| Protein Length | 1299 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639839095 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_986269 |
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| Protein GI | 121594373 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0450581 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.783142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAGGA GGGATATGCC CACTGAGGTG TTCCTCTCCG GCATCGTGCA CCTGCTGCTG
ATCGCCGGGG CGACCGCGCT GCCGCAATCC GTCCTGCTGC AACCCTCGCG CGGCGTGCGT
ATCGCGCTGG GCCTGGTGGC CGGGGCGGCG TCGACGCTGG TGGCCTTGCA GGGCATGCCG
CTAGACGCGC CCGGGGTGGC GTACATCCAC CCGCCCATCA TCGTTTCGGC CGCGTTCCTG
TTCGGGCCGT TGTGCGGTGG CGTGGCCGCA GTGGCTGCGC TGGCCAGCGG CTGGCTGGAC
GCGCCGGCCC ACTGGGGCGC CATGATCAGC CTGTCCGCGG CCTGCTGGGT GATGGGCTGC
CTGGCGTGGC TGCTGGGGCG CGCGACACGC TTGACGGCGA TATCGCTGGT GGTCGCGCTC
ACCGTGCTGG TGCCGCCCGC GCTGCTGCCC TGGACCGAGA CGGCCAGCGC CCTCGCCGCG
CAGGAGGGAT CGGCCCCGTG GCAGGGCATT CCCTGGCGCT ACGCCTTCGG CGTGGTGGCG
CTGTGCGGCG CCGTCGAGCT GTTGCGTGCG CGGGCCCGGT CGCTGCAGAC GCTGGGACAG
CACGAGGACG AGCTGCTGCG CGTGCTCAAG GCCTCGGGCG GCGGGCGCTG GGAATGGGAT
CTGCGCAACA GCCGCTTTAC CTACCACGGG CGCTTTTACC GGGCTTTCGG CCTGGCCAAC
AGCCCCGACG ACGAGGACTT CACACCGCTG CGCGCCTTCG ATGTGCGCGA GTCATGGCAA
CGCTGGAACG CCCGGCGCCA CCCCGACGAC CGCGAGCGCC TGGGCGCGTA CCTGCAGCGC
GTGCAGGACG GACTGGAAGA GAGCTTCCAT GCCGAGTCGC GCATGCGCGA TGACGAGGGC
CACTGGCGCT GGGTGGTCTC GCGCGGGCAC GCGGTGGAGC GCGACTCCGC CGGACGCGTG
CTGCGCATGG CCGGCATTGA CCTGGACATC ACCGAGCACC ACGAGATGCG CGACGCGCTG
CGCGTGTCCG AAGCCAAATA CACCACCGTC TACCAGACTC TGCCCGACGC CGCGGGCATC
ACCCGCCTGT CCGACGGGTG CTACCTGGAC GTGAACCCTG CGTTCGAGCG GTTGCTGGGC
AAGCCGCGCG ACCAGATTTT GGGACGTTCG TCCATGGAAC TGGGCGTGTG GGGCGACACG
CAGGAGCGCG CCCGCCTCAC CGAGGCGCTG CGCAACCAGG GCGAGGTCCG CGGCCTGCCA
ATGACGGCGC TGCGCGACGG CGCCGAAGTG CCGGGCCTCA TGTCGGGACG GGTGTCGCGC
ATTGAGGGCG AGGACTGCCT GGTCTTCGTG TTCCACGACA TGACGCAGGA GCGCCGTGTG
CGCGATGAAT TGCTCGCCGC CAACCGCCTG CTGCGCCAGG CGGGCTGGAT GGCGCGGCTG
GGCGTGTGGG AGGAAGAGCC GGGCAAAGGC ATCACCTATT GGTCCGACGT GTGCTTCGAC
ATCCACGGGC TGGACCCGGG CACGCCGCTG CCGCGCGACT ATGTGCAGCA GTTCGTCGCA
CCCGTCTGGC GGGAAGCCAT GCACGCAGCC CTGCGCGACT GCCTGCGCAA GCGCACTGTG
TGGAGCCAGG AAATCGAGAT CGTGCGCGCC GATGGGCGCC TGGTCTGGGT GCGCGTGCGC
GGGGAGCCCA TCATCGAGGG CGACCGCGTG GTGCGCGTGC GCGGCATCCT GCAGGACATC
GACGAGCCGC GCCGCGCGGC GCAGCGGCTG CGCTCTTCCG AAGAACGGCT GGCGCGCATC
TTCCAGCTGC TGCCCTACCC GCTGGGGTTC TCGCGCCGCG AGGACGGCAC CTACCTCGAC
GTGAATCCGG CGTGGGAGCA GGCCCTGGGC TACACCCGCC AGGAAGCCGT GGGGCGCACG
GTGGTGGAAC TGGGCATCTA TTCCGCCCCC ACCCGCGCGG CGCTGCTGGA GGCGGCGACG
GCCGAAGGGC AGCTTGTGGG CTACGAGCTG GAACTGACCA CGCGCGGCGG CGACAAGCGC
ACCGTGCTGC AGTCCATGAG CCCCATCGAA GTGAACGGCG AGGCCTGCTG GCTGTTCGGC
CTGCACGACA TCACCGAGCG CAAGCAGACC GAACAGCGCG TACGCGAGCG CGAGGAACTG
CTGTCGCTCA CCATCGAGGC GGCGGCGCTG GGCCTGTGGG ACTGGAACCT ACCCAGCTGC
GAAGTCACGG GCGACGCGCG CTGGCGCGCC ATGTACGGGC TGGCGCCCGT GGAGCCCGGG
GCCAGCGCTG CAGTGCACTG GGCGTCGGGT ATCACGCCGG AAGACATCGA CGTGGTTACC
CAGGAGCTGC GGCGCCACCT GCAGGAGCCG CACAAGCCGT TCGACGTGAC CTGCGAGGTG
CTTGCTCCCC AGGGCGACGG CCGCTGGATC CGCAGCGTGG GCAAGGTGGT GGCGTACGAC
GCCGCCGGGC AGCCCGCGCG CATGGTGGGC ATGTCCATCG ACGTGAGCAG CCAGCGCCAG
CAGGAGCGGC AACTGGAGCG CATGGCCCAT TACGACGCAC TCACCGGCCT GCCCAACCGG
GTGATGCTGG AGCGGCGGCT GCGCGCAGGC ATGGAGCACA GCCGTGCGCG CGGCCAGCAA
TTGGGCGTGG CCTACCTGGA CCTGGACGGC TTCAAGCCCG TCAACGACCG CCTGGGCCAC
GCGGCGGGCG ACCGGCTGCT GGTGGTGGTG GCCGAGCGGC TCAAGCGCGC CCTGCGCCTG
ACCGACTCGG TAGCGCGGCT GGGCGGGGAC GAGTTCGTGA TCCTGCTGTC GGGCTTGGCC
CATGCCGAGG AATGCGAGCG GCGCCTGCAC ACGGTGATGG AGAGCGTCGC GGCCCCCTAC
ACGCTGGACG GCGAGCGCGT GCTGGTCACC GCCAGCATCG GCTACACCCT TTACCCCGAC
GATGAGGCCG ACGCCGACAC CCTGCTGCGC CATGCCGATC AGGCCATGTA TGCGGCCAAG
CAGGCGGGGC GCAACCGCTT CCATGGCTTT GACGCCGCCG AGGAGCGCGC CCGGCAACTG
CGGCGCGAGC AGTGCGGCGA ACTACTGCTC GCGCTGCAGC GCGGCGAACT GACACTGTTC
CTGCAGCCCA AAGTGGACAT GCGGCTGGGC ACCGTGGTGG GGGCCGAGGC CCTGGCCCGC
TGGCAGCACC CCGAGCGCGG CCTGCTGTCG CCCGTGCATT TCCTGCACCT CATCGAAGGG
CATGCCGAGC TGCAGATGCG TTTTGGCGAA TGGGTGGTGG ACACCGCGCT GCAGCAGATC
GCCCGCCTGA TGGCGCAGGG TCTGGAACTG CCCGTCAGCA TCAACATCAC GCCCGAGCAC
CTGCACCGCC GGGGCTTTGC GGACTGGATG GCGTTGCGCC TGGCGCAGCA CCCCGCGGTG
CCGGCGCGGC TGCTGGCCAT CGAGCTCACC GAAAGCGCCG CGCTCTACGA CATCGACCAC
GTGGCGCGGG AGCTGACCAG ACTGCGCGCG CTGGGCATGC AGATCTCGTT CGACGACTTC
GGCACGGGCT ACTCGTCGCT GGCGTACCTG CGCCGCCTGC CCATGGACCA CCTCAAGCTG
GACCGCAGCT TCGTCGCCGG CATGCTGGGC GATGCGGGCG ACCGGGCCAT CGTGCAGGGC
GTGATCGGCC TGGCGCACTC CTTTGGCTGC GGCATCGTGG CCGAAGGGGT GGAAACGGTG
GAGCAAGGCC TGGCGCTGCT GCAGATGGGC TGCCACCATG CGCAGGGCTA CTGCATCGCC
ATGCCCATGC CCGTGGAGCA GTTCATGGAC TGGGCGAAGG CCTGGCAGGC CCCCGCACCA
TGGCGCGCCA CAGGCCAGGC CGCCGCGCCC GTACCACCGG CGGCGGCGAT AGCCGCTTGA
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| Protein sequence | MHRRDMPTEV FLSGIVHLLL IAGATALPQS VLLQPSRGVR IALGLVAGAA STLVALQGMP
LDAPGVAYIH PPIIVSAAFL FGPLCGGVAA VAALASGWLD APAHWGAMIS LSAACWVMGC
LAWLLGRATR LTAISLVVAL TVLVPPALLP WTETASALAA QEGSAPWQGI PWRYAFGVVA
LCGAVELLRA RARSLQTLGQ HEDELLRVLK ASGGGRWEWD LRNSRFTYHG RFYRAFGLAN
SPDDEDFTPL RAFDVRESWQ RWNARRHPDD RERLGAYLQR VQDGLEESFH AESRMRDDEG
HWRWVVSRGH AVERDSAGRV LRMAGIDLDI TEHHEMRDAL RVSEAKYTTV YQTLPDAAGI
TRLSDGCYLD VNPAFERLLG KPRDQILGRS SMELGVWGDT QERARLTEAL RNQGEVRGLP
MTALRDGAEV PGLMSGRVSR IEGEDCLVFV FHDMTQERRV RDELLAANRL LRQAGWMARL
GVWEEEPGKG ITYWSDVCFD IHGLDPGTPL PRDYVQQFVA PVWREAMHAA LRDCLRKRTV
WSQEIEIVRA DGRLVWVRVR GEPIIEGDRV VRVRGILQDI DEPRRAAQRL RSSEERLARI
FQLLPYPLGF SRREDGTYLD VNPAWEQALG YTRQEAVGRT VVELGIYSAP TRAALLEAAT
AEGQLVGYEL ELTTRGGDKR TVLQSMSPIE VNGEACWLFG LHDITERKQT EQRVREREEL
LSLTIEAAAL GLWDWNLPSC EVTGDARWRA MYGLAPVEPG ASAAVHWASG ITPEDIDVVT
QELRRHLQEP HKPFDVTCEV LAPQGDGRWI RSVGKVVAYD AAGQPARMVG MSIDVSSQRQ
QERQLERMAH YDALTGLPNR VMLERRLRAG MEHSRARGQQ LGVAYLDLDG FKPVNDRLGH
AAGDRLLVVV AERLKRALRL TDSVARLGGD EFVILLSGLA HAEECERRLH TVMESVAAPY
TLDGERVLVT ASIGYTLYPD DEADADTLLR HADQAMYAAK QAGRNRFHGF DAAEERARQL
RREQCGELLL ALQRGELTLF LQPKVDMRLG TVVGAEALAR WQHPERGLLS PVHFLHLIEG
HAELQMRFGE WVVDTALQQI ARLMAQGLEL PVSINITPEH LHRRGFADWM ALRLAQHPAV
PARLLAIELT ESAALYDIDH VARELTRLRA LGMQISFDDF GTGYSSLAYL RRLPMDHLKL
DRSFVAGMLG DAGDRAIVQG VIGLAHSFGC GIVAEGVETV EQGLALLQMG CHHAQGYCIA
MPMPVEQFMD WAKAWQAPAP WRATGQAAAP VPPAAAIAA
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