| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1886 |
|---|
| Symbol | |
|---|
| ID | 4671457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 1971445 |
|---|
| End bp | 1972698 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639838967 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_986142 |
|---|
| Protein GI | 121594246 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.455882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAT TTTCAATCTT TGGACATAAT TACTCTAATG TCCATAGAAT TTGGCCCATG
AGCAGTTTGA CCGTCGCCCC GACAGTTTTG GCGCATCTTG AGCCCTTGGA CGGCTTGGTG
CTACCCGTTC ATCTTTCCGG AGAGCGTGGC CGAAATCGGG CCCAGGGCCT GCCCCAGGTC
GCGGCCAATG ACGACCGCTC TGCAGTTTTG GCTTGGCTGG CGCGCTACAA GGATTCACCG
GCCACGCTGG CCAGCTATCG AAAGGAGGCG GAAAGACTGC TGCTTTGGTG CGTACACCAG
TATGGAAAGG CCCTGTCCGA TCTGACCCAC GAGGATTTCC TGGTCTACGA GTCCTTTCTG
GAAGATCCCC AACCGGTTGA TCGATGGGTC ATGCAGGTCG CGCAGAAGGC GCCGAGGTCT
TCGCCCCACT GGCGTCCGTT CGCCAAGCCA CTGGACCGGC AAAGCCAGCG CCAGGCACTC
TCGATCCTCA ACAGCCTCTT CAACTGGCTG GTTCAAGCCG GGTATCTGGC GGGCAACCCC
TTAGCTCTGC GCCGCCGCAA ATCTGTGGCG CGACCGGCCA AGACCAGCAG GTTCCTGCCA
CACGAGCACT GGGCGCAAGT ACGCGCAACG ATTGAGTCCC TTCCCACTGG CACGCCTCGC
CTCGCTCTCC AAGCGGCCCG ATATCGGTGG CTCTTCTCGC TCCTCTACAT CGGTGGCCTG
CGGATTTCTG AGGTCTGCAA CAACTCGATG GGAGATTTTT ACTGGCGTCG CGGAGCAGAC
GGGCATGAAC GCTGGTGGCT GGAGATACGA GGAAAAGGGG ACAAAACGCG GGCGATTCCG
GCGACCGATG AGTTAGTGTC AGAGTTGATG CGTTACAGGA ATGCACGCAA CTTGGCCCTA
CTACCACGAG AGGGAGATAC GCTCCCACTG CTGTTGCCCC TTATTGGTGG ATGTCGCCCC
ATGGGACGCA GTGGCGTGCA CGAATTGATT AAGGACATTT TCCGTAAAAC GGCAGCGCGC
CTGCGAAACC TAGGCACTGA CCACGAGGCA GCAGCGGCCC ATGTGGAACA GGCCTCCGCC
CACTGGATGC GCCATACGGC AGGCACTCAC CAAAGCGACA ATATGGACCT CAAGGCCGTG
CGCGACAACC TGGGGCACGC AAACATCGCC ACCACCAGTA TTTATTTGCA CACGGAAGAT
GACACGCGCC ATGATCAGAC CAGCAACGCA CACAAGCTGG GCTGGTCAGT TTGA
|
|---|
| Protein sequence | MNLFSIFGHN YSNVHRIWPM SSLTVAPTVL AHLEPLDGLV LPVHLSGERG RNRAQGLPQV
AANDDRSAVL AWLARYKDSP ATLASYRKEA ERLLLWCVHQ YGKALSDLTH EDFLVYESFL
EDPQPVDRWV MQVAQKAPRS SPHWRPFAKP LDRQSQRQAL SILNSLFNWL VQAGYLAGNP
LALRRRKSVA RPAKTSRFLP HEHWAQVRAT IESLPTGTPR LALQAARYRW LFSLLYIGGL
RISEVCNNSM GDFYWRRGAD GHERWWLEIR GKGDKTRAIP ATDELVSELM RYRNARNLAL
LPREGDTLPL LLPLIGGCRP MGRSGVHELI KDIFRKTAAR LRNLGTDHEA AAAHVEQASA
HWMRHTAGTH QSDNMDLKAV RDNLGHANIA TTSIYLHTED DTRHDQTSNA HKLGWSV
|
|---|
| |