| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1849 |
|---|
| Symbol | |
|---|
| ID | 4671335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 1931100 |
|---|
| End bp | 1934288 |
|---|
| Gene Length | 3189 bp |
|---|
| Protein Length | 1062 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639838936 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_986111 |
|---|
| Protein GI | 121594215 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.188693 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAAA AACTCATTCG ATTCTCTATC GAGCAGCGAT GGTTGGTGCT TCTAGCGGCC
CTGGGCATGG TGGCGCTTGG CGTCTTCAGC TACCAAAAGC TGCCTATCGA TGCGGTCCCT
GACATTACGA ACGTCCAGGT TCAGATCAAC ACCCAGGCCG CAGGCTACTC GCCTTTGGAG
ACTGAGCAGC GGGTTACATA CCCCATTGAG ACGGTCATGG CTGGCCTGCC AAACCTGGAG
CAGACCAGGT CGCTTTCGCG GTACGGTCTG TCGCAGGTGA CCGTCATTTT TAAAGACGGA
ACCGACATCT ATTTTGCTCG CCAGCTCGTC AACGAGCGCA TCCAGGAGGC GCGCGACAAG
CTGCCTGCCG GCATCACGCC AGCGCTGGGG CCCATCTCGA CCGGCCTGGG CGAAATCTAT
CTCTGGACTG TCGAAACCAA GGACGGGGCG AAGAAGCCCG ACGGCTCGCC CTATACCGCG
ACAGACCTGC GCGAGATTCA GGACTGGATC ATCAAGCCAC AGCTGCGAAA TGTTCCTGGC
GTGACCGAGA TCAATTCCAT TGGCGGCTTT GCCAAGGAAT ACCAGATCGC GCCCATCCCT
GAACGCCTGG CTTCTCTGGG CGTGACACTG CAGGATGTGG TCACTGCGCT GGACCGCAAC
AACGGCAATG TGGGCGCGGG CTATATCGAA AAGCGTGGCG AGCAGTATCT GATTCGTGCA
CCTGGTCAGG TGAAGTCGCT GGAAGACATC GGTAACGTGA TCCTCAGCAG CGCCAACGGT
GTTCCTGTGC GCGTTCGCGA CGTGGCTGAG GTGGGCATTG GCCGGGAACT GCGCACCGGT
GCAGCAACCG ATAACGGGCG CGAAGTGGTC CTCGGCACGG TGTTCATGCT GATCGGCGAG
AACAGCCGGA CTGTCTCGCA GGCGGTGGAC AAGAAGATGT TGGAAGTCAA CAAGAGCCTC
CCAGAGGGGG TGCACGCGGT GACTGTCTAC GACCGTACCG TGCTTGTTGA CAAAGCCATC
AGTACGGTGA AGAAGAACCT GCTGGAAGGC GCAGTTCTCG TGATCGTGAT CCTGTTCCTC
TTTCTGGGCA ACATCCGTGC CGCCGTCATC ACGGCAATGG TCATCCCCTT GTCGATGCTT
TTTACCTTCA CGGGTATGGT TCAGTACAAG GTGAGCGCCA ACCTGATGAG CCTGGGAGCG
TTGGACTTCG GCATCATCAT CGACGGAGCG GTGGTGATCG TTGAGAACTG CGTACGGAGA
CTTGCCCATG CACAAGCGCA CCACGGTCGG CCACTGACGC GGGCTGAGCG CTTCCATGAG
GTGTTTTTGG CATCCCAGGA GTCAAGGCGT CCATTGCTGT TCGGACAGCT CATCATCATG
GTGGTGTACC TGCCCATCTT CGCGCTGACA GGCGTTGAAG GGAAGATGTT CCACCCCATG
GCATTCACGG TGGTCGCGGC ACTGCTGGGC GCCATGATTC TGTCGGTGAC ATTCGTCCCC
GCAGCGGTGG CCCTGTTCAT CGGCAATCGG GTCAGCGAGA AGGAAAACTT CCTGCTGGGC
CATGCCAAGC GCTTGTATGG TCCACTGCTC GACCGTGTCA TGGCCGCCAA GGCGGTCGTA
CTGACCGCAG CTGCAGTTGC TGTGGTCTTG TGCGGGTTGA TCGCCACGCG CATGGGCAGC
GAATTTGTGC CCAATCTCAA TGAAGGCGAC TTTGCGATCC AGGCGCTGCG CATCCCGGGT
ACCAGCCTTT CCCAGTCAGT CCAAATGCAG CAGCAGATTG AAAGGACCTT GAAAGAGAAG
TTCCCCGAGA TCGAGCGCAT CTTCGCCAGA ACCGGTACTG CGGAGATTGC CTCGGACCCC
ATGCCGCCGA ACATTTCGGA CGGGTACATC ATGCTCAAGC CAATGGCCGA ATGGCCCGAA
CCTCGAAAAA CCCGCGACGA ACTACTCGCG GCGATTCAGG AAGTCATCGG GAAAATCCCG
GGCAACAACT ATGAGTTCTC CCAGCCCATT CAGCTGCGCT TTAACGAGCT GATCTCCGGG
GTGCGCAGTG ACGTAGCCGT GAAGATCTTC GGTGACGACA TGGATGTCCT GAACAAGTCC
GCAGAAGAAG TCTCCGCAAT GCTGCAGAAG ATTCAGGGCT CCTCTGAGGT GAAGGTTGAG
CAGACGACGG GGCTTCCGAT GCTCACCGTG AATATCGACC GCCAGAAGGC TGCTCGCTAT
GGTCTGAACG TTGCCGACAT TCAAGACACT GTGGCCACCG CTATCGGTGG ACGCGAGGCC
GGCACTATGT TCGAGGGCGA CCGCAGATTC GACATCCTGG TTCGTCTGCC TGAATCCCTG
CGCAACGATC TCGAAGGGAT GAAGCGCCTT CCTATCCCGC TGCCGCGTTC TGCCAATGGG
ACAGAGGCCA AAACGAACTT CATCCCGCTG GGCGAGGTAG CAACATTCGA GCTTGCTCCT
GGCCCCAACC AGGTGAGTCG AGAGAACGGC AAGCGCCGCA TCGTCGTGAG CACCAACGTG
CGCGGGCGCG ATGTGGGCTC TTTCGTCGCA GAGGCTGAGC AAGGCCTGGC CCAGATCAAG
ATTCCTACCG GCTATTGGAC GAGCTGGGGG GGAACCTTCG AGAACTTGCA GTCGGCCACT
CAGCGCCTGC AGATCGTCGT GCCGGTGTCC CTGCTGCTGG TTTTTGTGCT GCTATTCGCT
ATGTTCGGCA ACGTCAAGGA TGGTCTGCTG GTCTTCACCG GCATCCCATT CGCTTTGACG
GGGGGCATCC TGGCGCTTTG GCTTCGCGAC ATTCCGATGT CTATCTCTGC GGCGGTCGGC
TTCATCGCGC TTTCTGGGGT GGCCGTGCTC AATGGTCTGG TGATGATTTC GTACATCCGC
AGCTTGAGGG AAGGCGGCGT TGGTCTTGAC GAAGCAATCC GTGACGGCGC GCTCACCCGG
CTACGGCCGG TTCTGATGAC TGCCCTGGTG GCCTCGCTGG GCTTCATTCC CATGGCCATT
GCGACAGGCA CTGGCGCTGA AGTCCAGCGT CCCCTGGCCA CCGTGGTGAT CGGCGGAATT
CTCTCGTCCA CGCTGCTCAC GCTTCTCGTG CTGCCGATTC TTTACCGTCT GGCCCACCGG
CCCGATGAGG AAGATGAGGA CGTGTCCGCT GAGCCCTCGC ATCCCCCAGA CGTGTCCGCG
TCCGCGTAG
|
|---|
| Protein sequence | MFEKLIRFSI EQRWLVLLAA LGMVALGVFS YQKLPIDAVP DITNVQVQIN TQAAGYSPLE
TEQRVTYPIE TVMAGLPNLE QTRSLSRYGL SQVTVIFKDG TDIYFARQLV NERIQEARDK
LPAGITPALG PISTGLGEIY LWTVETKDGA KKPDGSPYTA TDLREIQDWI IKPQLRNVPG
VTEINSIGGF AKEYQIAPIP ERLASLGVTL QDVVTALDRN NGNVGAGYIE KRGEQYLIRA
PGQVKSLEDI GNVILSSANG VPVRVRDVAE VGIGRELRTG AATDNGREVV LGTVFMLIGE
NSRTVSQAVD KKMLEVNKSL PEGVHAVTVY DRTVLVDKAI STVKKNLLEG AVLVIVILFL
FLGNIRAAVI TAMVIPLSML FTFTGMVQYK VSANLMSLGA LDFGIIIDGA VVIVENCVRR
LAHAQAHHGR PLTRAERFHE VFLASQESRR PLLFGQLIIM VVYLPIFALT GVEGKMFHPM
AFTVVAALLG AMILSVTFVP AAVALFIGNR VSEKENFLLG HAKRLYGPLL DRVMAAKAVV
LTAAAVAVVL CGLIATRMGS EFVPNLNEGD FAIQALRIPG TSLSQSVQMQ QQIERTLKEK
FPEIERIFAR TGTAEIASDP MPPNISDGYI MLKPMAEWPE PRKTRDELLA AIQEVIGKIP
GNNYEFSQPI QLRFNELISG VRSDVAVKIF GDDMDVLNKS AEEVSAMLQK IQGSSEVKVE
QTTGLPMLTV NIDRQKAARY GLNVADIQDT VATAIGGREA GTMFEGDRRF DILVRLPESL
RNDLEGMKRL PIPLPRSANG TEAKTNFIPL GEVATFELAP GPNQVSRENG KRRIVVSTNV
RGRDVGSFVA EAEQGLAQIK IPTGYWTSWG GTFENLQSAT QRLQIVVPVS LLLVFVLLFA
MFGNVKDGLL VFTGIPFALT GGILALWLRD IPMSISAAVG FIALSGVAVL NGLVMISYIR
SLREGGVGLD EAIRDGALTR LRPVLMTALV ASLGFIPMAI ATGTGAEVQR PLATVVIGGI
LSSTLLTLLV LPILYRLAHR PDEEDEDVSA EPSHPPDVSA SA
|
|---|
| |