Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_1830 |
Symbol | |
ID | 4672570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 1905731 |
End bp | 1909294 |
Gene Length | 3564 bp |
Protein Length | 1187 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639838918 |
Product | DNA polymerase III, alpha subunit |
Protein accession | YP_986093 |
Protein GI | 121594197 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.575666 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.115654 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGCGT TCCTACAATG CCGCATGTTT GTCCACTTGC GCTTGCACAC TGAATTTTCC GTCGTGGACG GAACCACCCG TATCGACGAG GTCGTCAAGG CGGCGGCGAA AGACGGCCAG CCCGCCCTGG CGATCACTGA CCTGAACAAC CTGTTCGGCG CGATCAAGTT CTACAAGGAA GGCCGGGGCA AGGGCGTCAA GCCCATCCTG GGCGCCGAAA TCTACCTGGA GGCCGAAGCG GCAGGCGCAC CCTCGCGCAT GGTGCTGCTG GTGCAGAACC GCACCGGGTA TCTGAACCTC TCCGAACTGC TGGCCCGCGC GTGGACGCGC AACATCGTCA GGAACCAGGC GCTGTGCACC TGGGAGTGGC TGCAGGAATT GGGCGACGGC CTGATTGCCC TCGCTGGAGC ACAGGCCGGT CCCGTGGGGC AGGCGCTCAT GAAGGGCGAT GACGCCGGAG CTGCGCAGCT GGCGCTGCGT CTGGCGGGCA TTTTCCCGCA CCGCTTCTAC CTGGAGGTCC AGCGCGCCGG ACGACCTGAC GACGAAGCCC ATGTCACCGC CGCGGTGCAG CTTGCCGCGC GCCTGGCCCT GCCGGTGGTA GCCACCCACC CGGTGCAGTT CGCAACGCCG GACGATTACG AGGCGCACGA GGCGCGTGTG TGCATTGCCG AGGGCGAGAT CTTGGCGAAT CCGCGGCGCG TGCGCCGTTT CACGCGCGAG CAGTATTTCA AGAGCAGTGC CGAGATGGAA GCGCTGTTCG CCGATGTACC CAGCGCCCTC GCCAACACCG TTGAGGTGGC CAAGCGCTGC AATGTGTCGC TGGTGCTGGG CAAGCCGCAA CTGCCGAACT TCCCCATTCC GGGCGGCATG ACGATGGAGC AGTACTTCCG CCACGCGTCC CACGAGGGCC TGGAGGAGCG GCTGCTGCAC CTGTACCCGG ACACCGCCGA GCGCGACCGC CAGCGCCCCC GCTACCAGGA GCGGCTGGAG TTCGAACTGG GCACGATCCT GAAGATGGGC TTTCCAGGCT ACTTCCTCAT CGTGGGTGAC TTCATCCAGT GGGCCAAGAA GAACGGCTGC CCGGTGGGCC CCGGGCGCGG CTCGGGTGCG GGCTCGCTCG TGGCCTACGC GCTCAAGATC ACGGATCTGG ATCCGCTGCA ATACAACCTG CTGTTCGAGC GCTTCCTGAA CCCCGAGCGG GTGTCCATGC CCGACTTCGA CATCGATTTT TGCCAGGCCA ACCGCGACCG CGTGATCGAC TATGTGAAGG ACAAGTACGG CAAGGAGGCC GTGAGCCAGA TCGCCACGTT CGGCACGATG GCGGCCAAGG CTGCCATCCG CGACGTGGGG CGGGTGATGG ATATGAGCTA CACGTTCTGT GACGGTATCT CGAAGCTGGT GCCCGGCAAA CCCGGCCAGA CCTATACGCT GGCCTACCCG CCAGAGCCCA AGAAGGAAGG GGACAAGAAC AACTACGCCC TGGAGTTGGA ACCCATCCTG TACGAGCGCG TGCGCAAGGA GGAGGACGTG CGCACCATCA TCGAGATGGC GCAAAAGCTC GAAGGGATGA CGCGCAATAT TGGCATGCAC GCCGGCGGCG TGCTGATCGC GCCGGGCAAG CTGACCGATT TCTGCCCGCT GTACCAGCAG CCTGGCAGCG AATCGGCGGT GAGCCAGTAC GACAAGGACG ACGTGGAGGC CATCGGCCTG GTGAAATTCG ACTTCCTGGG CTTGGCGACG CTGACCATCC TGGAAATCGC GCGTGAGTTC ATCATGCAGC GTCACAAAGG GCAGGAAAAC TTCGCGTTCG AGAACATTCC CCTGGACGAT GCTGCGACCT ACAAACTGTT CTCGGACGGC AAGACAGAAG CCGTGTTCCA GTTTGAAAGC CGGGGCATGC AAGGCATGCT CAAGGAAGCG CGCCCAAGCA GGCTGGAAGA CCTGATCGCC TTGAATGCCC TGTACCGGCC CGGCCCCATG GACCTGATTC CCAGCTTCGT GAACCGCAAG CACGGCAAGG AGGTGGTGGA GTACCCGCAT CCGCTGGTGG AGCCCGTGCT GGCCGAGACC TACGGCATCA TGGTCTACCA GGAGCAGGTG ATGCAGACGG CGCAGGTGCT GGGTGGTTAC TCGCTCGGCG GCGCCGACAT GCTGCGCCGC GCCATGGGCA AGAAAAAGGC CGAGGAAATG GCCGAGCACC GTGCCATCTT CCGCAAGGGT GCAGCCGAAA AGGGTATCAG TCAGGACAAG GCCGACGAGG TCTTCGACCT GATGGAAAAG TTCGCGGGTT ACGGCTTCAA CAAGTCGCAC GCCGCCGCCT ATTCGCTGCT GGCCTACCAC ACCGGGTGGC TCAAGGTGCA CTACACGGCG GAGTTTTACT GCGCCAATAT GACCGTGGAA ATGGACGACA CCGACAAGCT CAAGGTGCTC TATGAAGATG CGGTCAAACA TTTCGGCATG ACCTTCGAGC CGCCGGACAT CAACCGCGGC AATTACCGCT TCGAGCCGGT GACGGACAAG GTCATCCGCT ATGGCCTGGG CGCAGTCAAG GGCACGGGAC AGCAGGCGAT CGAGGCCATC ATCGCTGCAC GCGAAGGGCA GGGCGTGGGC CCACAGGGCG CAACCCGGGG GCCTTTCAAG AGCTTGTTTG ACTTTTGCGT ACGCGTGGAC CGCACGCGCG TCAACAAGCG AACGGTGGAG GCGCTCATCA AGGCGGGCGC CTTCGATGCC CTGCAGCTCA ACCGTGCCGC GCTCGTGGCA TCCCTCGATC GGGCGTTCGA GTTTGCCAAT GCGCAGATCG CCAACGCCAA CCAAGGCGGG CTGTTCGACA TGATGGGCGA TGACGCCATC GGCTCCAGCA CGCAGGAGCC TGATCTGGTG GATGTGATGC CCTGGGGCAT CAAGGAACGG CTGATGCAGG AGAAGACCGC GGTGGGCTTC TACCTCTCGG GCCACTTGTT CGATGAAGTG CACCAGGAAG TGCGCCGCTT CGTGCGCACC GCTATCGACG AACTGGTAGA CAGCCGCGAG ACGCAGGTGG TCGCCGGCAT CGTGAGCGAC TACCGCGTCA TCAACGGGCA GCGCGGCAGG CTGGCGTTGT TCAAGCTGGA CGACAAGTCG GGCGTCATCG AGGCTTCCGC CGACGAAGGG CTGATCAACG CGAACGCCGG CCTGCTCAAG GACGATGAAT TCGTAGTGGT GAGTGGTCGG CTGCAGTTGG ACCACTTCAG CGGAGGCCTG CGCATGAAGG TGCAGCAGGT CTGGGATTTG GCGGGTGCGC GGGCACGCTA TGGGCGCTAT CTGCAGGTGT GCCTGGGGCA GCAGTTGCCA GACATCGGGG CGCTGGTGCG TGACTATCCT CCGCAACGGG AGGAGACAGA ACACGGCGAG GTGCTTGCCC ATGGCCTGCG CGTGCGCATG CAGTTGCGCT GCACAGCGGC GGCCGGCGCG GCCACGGCCG AGGTGCAGTT GGGAGAGGCC AGCCGGTTCT TTCCCAGCGA TGCCGCGCTG GCCGCGTGGA GCGCTCAGGC GGGCAGCGGT GCTGTGAATG TGGTCTATGA GTAG
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Protein sequence | MPAFLQCRMF VHLRLHTEFS VVDGTTRIDE VVKAAAKDGQ PALAITDLNN LFGAIKFYKE GRGKGVKPIL GAEIYLEAEA AGAPSRMVLL VQNRTGYLNL SELLARAWTR NIVRNQALCT WEWLQELGDG LIALAGAQAG PVGQALMKGD DAGAAQLALR LAGIFPHRFY LEVQRAGRPD DEAHVTAAVQ LAARLALPVV ATHPVQFATP DDYEAHEARV CIAEGEILAN PRRVRRFTRE QYFKSSAEME ALFADVPSAL ANTVEVAKRC NVSLVLGKPQ LPNFPIPGGM TMEQYFRHAS HEGLEERLLH LYPDTAERDR QRPRYQERLE FELGTILKMG FPGYFLIVGD FIQWAKKNGC PVGPGRGSGA GSLVAYALKI TDLDPLQYNL LFERFLNPER VSMPDFDIDF CQANRDRVID YVKDKYGKEA VSQIATFGTM AAKAAIRDVG RVMDMSYTFC DGISKLVPGK PGQTYTLAYP PEPKKEGDKN NYALELEPIL YERVRKEEDV RTIIEMAQKL EGMTRNIGMH AGGVLIAPGK LTDFCPLYQQ PGSESAVSQY DKDDVEAIGL VKFDFLGLAT LTILEIAREF IMQRHKGQEN FAFENIPLDD AATYKLFSDG KTEAVFQFES RGMQGMLKEA RPSRLEDLIA LNALYRPGPM DLIPSFVNRK HGKEVVEYPH PLVEPVLAET YGIMVYQEQV MQTAQVLGGY SLGGADMLRR AMGKKKAEEM AEHRAIFRKG AAEKGISQDK ADEVFDLMEK FAGYGFNKSH AAAYSLLAYH TGWLKVHYTA EFYCANMTVE MDDTDKLKVL YEDAVKHFGM TFEPPDINRG NYRFEPVTDK VIRYGLGAVK GTGQQAIEAI IAAREGQGVG PQGATRGPFK SLFDFCVRVD RTRVNKRTVE ALIKAGAFDA LQLNRAALVA SLDRAFEFAN AQIANANQGG LFDMMGDDAI GSSTQEPDLV DVMPWGIKER LMQEKTAVGF YLSGHLFDEV HQEVRRFVRT AIDELVDSRE TQVVAGIVSD YRVINGQRGR LALFKLDDKS GVIEASADEG LINANAGLLK DDEFVVVSGR LQLDHFSGGL RMKVQQVWDL AGARARYGRY LQVCLGQQLP DIGALVRDYP PQREETEHGE VLAHGLRVRM QLRCTAAAGA ATAEVQLGEA SRFFPSDAAL AAWSAQAGSG AVNVVYE
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