Gene Ajs_1830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_1830 
Symbol 
ID4672570 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp1905731 
End bp1909294 
Gene Length3564 bp 
Protein Length1187 aa 
Translation table11 
GC content64% 
IMG OID639838918 
ProductDNA polymerase III, alpha subunit 
Protein accessionYP_986093 
Protein GI121594197 
COG category[L] Replication, recombination and repair 
COG ID[COG0587] DNA polymerase III, alpha subunit 
TIGRFAM ID[TIGR00594] DNA-directed DNA polymerase III (polc) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.575666 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.115654 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCGT TCCTACAATG CCGCATGTTT GTCCACTTGC GCTTGCACAC TGAATTTTCC 
GTCGTGGACG GAACCACCCG TATCGACGAG GTCGTCAAGG CGGCGGCGAA AGACGGCCAG
CCCGCCCTGG CGATCACTGA CCTGAACAAC CTGTTCGGCG CGATCAAGTT CTACAAGGAA
GGCCGGGGCA AGGGCGTCAA GCCCATCCTG GGCGCCGAAA TCTACCTGGA GGCCGAAGCG
GCAGGCGCAC CCTCGCGCAT GGTGCTGCTG GTGCAGAACC GCACCGGGTA TCTGAACCTC
TCCGAACTGC TGGCCCGCGC GTGGACGCGC AACATCGTCA GGAACCAGGC GCTGTGCACC
TGGGAGTGGC TGCAGGAATT GGGCGACGGC CTGATTGCCC TCGCTGGAGC ACAGGCCGGT
CCCGTGGGGC AGGCGCTCAT GAAGGGCGAT GACGCCGGAG CTGCGCAGCT GGCGCTGCGT
CTGGCGGGCA TTTTCCCGCA CCGCTTCTAC CTGGAGGTCC AGCGCGCCGG ACGACCTGAC
GACGAAGCCC ATGTCACCGC CGCGGTGCAG CTTGCCGCGC GCCTGGCCCT GCCGGTGGTA
GCCACCCACC CGGTGCAGTT CGCAACGCCG GACGATTACG AGGCGCACGA GGCGCGTGTG
TGCATTGCCG AGGGCGAGAT CTTGGCGAAT CCGCGGCGCG TGCGCCGTTT CACGCGCGAG
CAGTATTTCA AGAGCAGTGC CGAGATGGAA GCGCTGTTCG CCGATGTACC CAGCGCCCTC
GCCAACACCG TTGAGGTGGC CAAGCGCTGC AATGTGTCGC TGGTGCTGGG CAAGCCGCAA
CTGCCGAACT TCCCCATTCC GGGCGGCATG ACGATGGAGC AGTACTTCCG CCACGCGTCC
CACGAGGGCC TGGAGGAGCG GCTGCTGCAC CTGTACCCGG ACACCGCCGA GCGCGACCGC
CAGCGCCCCC GCTACCAGGA GCGGCTGGAG TTCGAACTGG GCACGATCCT GAAGATGGGC
TTTCCAGGCT ACTTCCTCAT CGTGGGTGAC TTCATCCAGT GGGCCAAGAA GAACGGCTGC
CCGGTGGGCC CCGGGCGCGG CTCGGGTGCG GGCTCGCTCG TGGCCTACGC GCTCAAGATC
ACGGATCTGG ATCCGCTGCA ATACAACCTG CTGTTCGAGC GCTTCCTGAA CCCCGAGCGG
GTGTCCATGC CCGACTTCGA CATCGATTTT TGCCAGGCCA ACCGCGACCG CGTGATCGAC
TATGTGAAGG ACAAGTACGG CAAGGAGGCC GTGAGCCAGA TCGCCACGTT CGGCACGATG
GCGGCCAAGG CTGCCATCCG CGACGTGGGG CGGGTGATGG ATATGAGCTA CACGTTCTGT
GACGGTATCT CGAAGCTGGT GCCCGGCAAA CCCGGCCAGA CCTATACGCT GGCCTACCCG
CCAGAGCCCA AGAAGGAAGG GGACAAGAAC AACTACGCCC TGGAGTTGGA ACCCATCCTG
TACGAGCGCG TGCGCAAGGA GGAGGACGTG CGCACCATCA TCGAGATGGC GCAAAAGCTC
GAAGGGATGA CGCGCAATAT TGGCATGCAC GCCGGCGGCG TGCTGATCGC GCCGGGCAAG
CTGACCGATT TCTGCCCGCT GTACCAGCAG CCTGGCAGCG AATCGGCGGT GAGCCAGTAC
GACAAGGACG ACGTGGAGGC CATCGGCCTG GTGAAATTCG ACTTCCTGGG CTTGGCGACG
CTGACCATCC TGGAAATCGC GCGTGAGTTC ATCATGCAGC GTCACAAAGG GCAGGAAAAC
TTCGCGTTCG AGAACATTCC CCTGGACGAT GCTGCGACCT ACAAACTGTT CTCGGACGGC
AAGACAGAAG CCGTGTTCCA GTTTGAAAGC CGGGGCATGC AAGGCATGCT CAAGGAAGCG
CGCCCAAGCA GGCTGGAAGA CCTGATCGCC TTGAATGCCC TGTACCGGCC CGGCCCCATG
GACCTGATTC CCAGCTTCGT GAACCGCAAG CACGGCAAGG AGGTGGTGGA GTACCCGCAT
CCGCTGGTGG AGCCCGTGCT GGCCGAGACC TACGGCATCA TGGTCTACCA GGAGCAGGTG
ATGCAGACGG CGCAGGTGCT GGGTGGTTAC TCGCTCGGCG GCGCCGACAT GCTGCGCCGC
GCCATGGGCA AGAAAAAGGC CGAGGAAATG GCCGAGCACC GTGCCATCTT CCGCAAGGGT
GCAGCCGAAA AGGGTATCAG TCAGGACAAG GCCGACGAGG TCTTCGACCT GATGGAAAAG
TTCGCGGGTT ACGGCTTCAA CAAGTCGCAC GCCGCCGCCT ATTCGCTGCT GGCCTACCAC
ACCGGGTGGC TCAAGGTGCA CTACACGGCG GAGTTTTACT GCGCCAATAT GACCGTGGAA
ATGGACGACA CCGACAAGCT CAAGGTGCTC TATGAAGATG CGGTCAAACA TTTCGGCATG
ACCTTCGAGC CGCCGGACAT CAACCGCGGC AATTACCGCT TCGAGCCGGT GACGGACAAG
GTCATCCGCT ATGGCCTGGG CGCAGTCAAG GGCACGGGAC AGCAGGCGAT CGAGGCCATC
ATCGCTGCAC GCGAAGGGCA GGGCGTGGGC CCACAGGGCG CAACCCGGGG GCCTTTCAAG
AGCTTGTTTG ACTTTTGCGT ACGCGTGGAC CGCACGCGCG TCAACAAGCG AACGGTGGAG
GCGCTCATCA AGGCGGGCGC CTTCGATGCC CTGCAGCTCA ACCGTGCCGC GCTCGTGGCA
TCCCTCGATC GGGCGTTCGA GTTTGCCAAT GCGCAGATCG CCAACGCCAA CCAAGGCGGG
CTGTTCGACA TGATGGGCGA TGACGCCATC GGCTCCAGCA CGCAGGAGCC TGATCTGGTG
GATGTGATGC CCTGGGGCAT CAAGGAACGG CTGATGCAGG AGAAGACCGC GGTGGGCTTC
TACCTCTCGG GCCACTTGTT CGATGAAGTG CACCAGGAAG TGCGCCGCTT CGTGCGCACC
GCTATCGACG AACTGGTAGA CAGCCGCGAG ACGCAGGTGG TCGCCGGCAT CGTGAGCGAC
TACCGCGTCA TCAACGGGCA GCGCGGCAGG CTGGCGTTGT TCAAGCTGGA CGACAAGTCG
GGCGTCATCG AGGCTTCCGC CGACGAAGGG CTGATCAACG CGAACGCCGG CCTGCTCAAG
GACGATGAAT TCGTAGTGGT GAGTGGTCGG CTGCAGTTGG ACCACTTCAG CGGAGGCCTG
CGCATGAAGG TGCAGCAGGT CTGGGATTTG GCGGGTGCGC GGGCACGCTA TGGGCGCTAT
CTGCAGGTGT GCCTGGGGCA GCAGTTGCCA GACATCGGGG CGCTGGTGCG TGACTATCCT
CCGCAACGGG AGGAGACAGA ACACGGCGAG GTGCTTGCCC ATGGCCTGCG CGTGCGCATG
CAGTTGCGCT GCACAGCGGC GGCCGGCGCG GCCACGGCCG AGGTGCAGTT GGGAGAGGCC
AGCCGGTTCT TTCCCAGCGA TGCCGCGCTG GCCGCGTGGA GCGCTCAGGC GGGCAGCGGT
GCTGTGAATG TGGTCTATGA GTAG
 
Protein sequence
MPAFLQCRMF VHLRLHTEFS VVDGTTRIDE VVKAAAKDGQ PALAITDLNN LFGAIKFYKE 
GRGKGVKPIL GAEIYLEAEA AGAPSRMVLL VQNRTGYLNL SELLARAWTR NIVRNQALCT
WEWLQELGDG LIALAGAQAG PVGQALMKGD DAGAAQLALR LAGIFPHRFY LEVQRAGRPD
DEAHVTAAVQ LAARLALPVV ATHPVQFATP DDYEAHEARV CIAEGEILAN PRRVRRFTRE
QYFKSSAEME ALFADVPSAL ANTVEVAKRC NVSLVLGKPQ LPNFPIPGGM TMEQYFRHAS
HEGLEERLLH LYPDTAERDR QRPRYQERLE FELGTILKMG FPGYFLIVGD FIQWAKKNGC
PVGPGRGSGA GSLVAYALKI TDLDPLQYNL LFERFLNPER VSMPDFDIDF CQANRDRVID
YVKDKYGKEA VSQIATFGTM AAKAAIRDVG RVMDMSYTFC DGISKLVPGK PGQTYTLAYP
PEPKKEGDKN NYALELEPIL YERVRKEEDV RTIIEMAQKL EGMTRNIGMH AGGVLIAPGK
LTDFCPLYQQ PGSESAVSQY DKDDVEAIGL VKFDFLGLAT LTILEIAREF IMQRHKGQEN
FAFENIPLDD AATYKLFSDG KTEAVFQFES RGMQGMLKEA RPSRLEDLIA LNALYRPGPM
DLIPSFVNRK HGKEVVEYPH PLVEPVLAET YGIMVYQEQV MQTAQVLGGY SLGGADMLRR
AMGKKKAEEM AEHRAIFRKG AAEKGISQDK ADEVFDLMEK FAGYGFNKSH AAAYSLLAYH
TGWLKVHYTA EFYCANMTVE MDDTDKLKVL YEDAVKHFGM TFEPPDINRG NYRFEPVTDK
VIRYGLGAVK GTGQQAIEAI IAAREGQGVG PQGATRGPFK SLFDFCVRVD RTRVNKRTVE
ALIKAGAFDA LQLNRAALVA SLDRAFEFAN AQIANANQGG LFDMMGDDAI GSSTQEPDLV
DVMPWGIKER LMQEKTAVGF YLSGHLFDEV HQEVRRFVRT AIDELVDSRE TQVVAGIVSD
YRVINGQRGR LALFKLDDKS GVIEASADEG LINANAGLLK DDEFVVVSGR LQLDHFSGGL
RMKVQQVWDL AGARARYGRY LQVCLGQQLP DIGALVRDYP PQREETEHGE VLAHGLRVRM
QLRCTAAAGA ATAEVQLGEA SRFFPSDAAL AAWSAQAGSG AVNVVYE