Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_1810 |
Symbol | |
ID | 4674691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 1879578 |
End bp | 1881452 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639838898 |
Product | extracellular solute-binding protein |
Protein accession | YP_986073 |
Protein GI | 121594177 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0607685 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGTTCT GGCGTATCTG TTTATTGATC GGTTGGCTGG GAGGGAGCAG CGTGGCGGGC GGGGCGGCCT GGGCCGCGCA TGCCTACGCG ATGTGGGGGG CGCCCGCGCT GGCGGCCGAC TTCGCGCACT TCCCCTACGT CAACCCACAG GCGCCCAAGG GCGGCGAACT GCGCCTGGTG AGCAATCTGC GCACCTCCAC CTTCGACAAG TACAACCCAT TCACGATCCG CGGCAACGCG CCGGCCTACC TGTCGGCGCT GATGTTCGAC TCGCTGCTCA CCGGCTCGCT GGACGAAACG GCCACCGGCT ATGGACTGCT GGCCGAGGAT GTGGCGGTGG CGCCGGATGG CCTGTCGGCC ACCTTCAGGC TGCGGCCCGA GGCGCGCTTT CACAACGGCA AGCCGGTGCT GGCCCAGGAT GTAAAGCACA GTTTCGACAC CCTGATGGGC CCTTACACCT CACCGGGCTA CAAAACGCTC CTGATCGAGG TGGCCGGTGT GGATGTGCTG GACGACCGCA CCGTGCGCTA CCGCTTCAAG GCGCCCAACC GCGAACTGCC GCTCACCGTC GGGGGGCTAC CCGTGTTCAG CCGCGACTGG GGACGGGGCG CCGACGGCAA GCCCAAGCCG TTCGACCAGG TGGTGATGGA CATCCCCATC GGCAGCGGAC CGTACAAGAT TGGGCCTGTC AACTTCGGCA AGGACATCAC CTATGTGCGC GACCCCCAGT ATTGGGCGCG CGACCTGCCC GTGCGCAAGG GGACGGCCAA CTTTGACCGT GTGCTGGTCA AGATCTACAA GGACAACACT GCGCGGCTGG AGGCGCTGAA GGCCGGCGAG TTCGATCTGA TGCGGTTTTT CAGTGCGGGC GACTGGGCGC GGCGGGTCAA CGGCCGCAAG TTCGACACGG GTGAGCTGGT CAAGGGCGAG TTCGCCAACA AGCTGCCCTC GGGCTTCCAG AGCTACGTAT TGAACACGCG CCGCCCGCTG CTGCAGGACC GCCGCGTGCG AGAGGCCCTG GGGCTGGCGT TCGACTTTGA GTGGATGAAC CGCCAGCTTT TCTATGGTGC TTATCAGCGC GTGCGCGGCA TTTTCGGCAA CACCATGTGC GAGACGCATG GCATGCCCAC GCCGCAGGAG CTGGCGCTGC TGGAGCCCTG GCGCAAGGAT CTGCCCCCCG CGGTCTTCGG CCCCATGTTC GAGCCGCCCA CCACCGACGG CGCCACCACG CTGCGCGACA ACCTGCGCCG CGCGCAGGCG CTGCTCCAGG AGGCAGGCTG GCAGGTGCAG GATGGCGTGC TGCGCAACGC CAGCGGCCAG GCCATGGTGC TGGAATACAT GGACAGCAGC GAAGGCGGCG TGCGCACGCT GGCCTCGTGG ATGCGCAACC TGCAAAAGCT CGGCATCACC CTCAAGTTCC GCTCGGTGGA CTTCGCGCTG TACCAGCAGC GCCTGCAGAA GTTCGACTTC GACATCACCA CCATTGCCTA CCAGGGCACC AACAACCCGG GGCAGGAGTT TGCCGACCTG TTCGGCAGCG CGGCGGCAGA CCAGGAAGAC TCGGGCAATT TCCCCGGCGT AAAGAGCCCG GCCGTGGACG CAATGATCCG TGCCATGGTC TCCGCCAAGA CGCAGGAACA GATGTTGCCC GCGTGCCATG CGCTGGACCG CATCATTGCG CACGGCCACT ACCTCATTCC GCAGTGGTCC GCGGGCACCC ATCGCATGGT CTACAACGCC TGGCGCCTGG ACCGGCCCGA AGTGGTGCCG CCGTATTCGA CCGGAGAGAT GTGGGCGGTG GATACGTGGT GGGCCCGTTC GCCTGCGTTG ACCGCCGAGA CCGCGCCCAA GGCCGCGACG CCGCGCAAGG ACTGA
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Protein sequence | MRFWRICLLI GWLGGSSVAG GAAWAAHAYA MWGAPALAAD FAHFPYVNPQ APKGGELRLV SNLRTSTFDK YNPFTIRGNA PAYLSALMFD SLLTGSLDET ATGYGLLAED VAVAPDGLSA TFRLRPEARF HNGKPVLAQD VKHSFDTLMG PYTSPGYKTL LIEVAGVDVL DDRTVRYRFK APNRELPLTV GGLPVFSRDW GRGADGKPKP FDQVVMDIPI GSGPYKIGPV NFGKDITYVR DPQYWARDLP VRKGTANFDR VLVKIYKDNT ARLEALKAGE FDLMRFFSAG DWARRVNGRK FDTGELVKGE FANKLPSGFQ SYVLNTRRPL LQDRRVREAL GLAFDFEWMN RQLFYGAYQR VRGIFGNTMC ETHGMPTPQE LALLEPWRKD LPPAVFGPMF EPPTTDGATT LRDNLRRAQA LLQEAGWQVQ DGVLRNASGQ AMVLEYMDSS EGGVRTLASW MRNLQKLGIT LKFRSVDFAL YQQRLQKFDF DITTIAYQGT NNPGQEFADL FGSAAADQED SGNFPGVKSP AVDAMIRAMV SAKTQEQMLP ACHALDRIIA HGHYLIPQWS AGTHRMVYNA WRLDRPEVVP PYSTGEMWAV DTWWARSPAL TAETAPKAAT PRKD
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