| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1774 |
|---|
| Symbol | |
|---|
| ID | 4672232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 1840156 |
|---|
| End bp | 1841694 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639838862 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_986038 |
|---|
| Protein GI | 121594142 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA AGCTCATCAT TTTCGACACC ACCTTGCGCG ACGGCGAGCA GTCGCCGGGA
GCTTCCATGA CGCGCGATGA AAAGCTGCGC ATTGCCCGTC AATTGGAGCG GCTGCGTGTG
GATGTGATCG AGGCGGGTTT TGCCGCCAGT TCCAACGGCG ACTTCGAATC GGTGCAGGCC
ATTGCGCGCG CAGTGAAGGA TTCCACGGTC TGCTCGCTGG CACGTGCCAA CGACCGGGAC
ATCGCACGTG CTGCCGAGGC GCTCAAAGAG GCAAACCGCG CGCGCATCCA TACGTTCATC
GCCACCAGCG CGCTGCACAT GGAAAAGAAG CTGCGCATGA CGCCCGAGCA GGTGCTGGAG
CAAGCCAGGC AGGCGGTGCG TTTTGCACGC AACCTGGTGG AGGACATCGA ATTCAGCCCC
GAGGATGGCT ACCGCAGCGA TCCGGACTTC CTGTGCCGCG TGATCGAGAC GGTGATCGCG
GAGGGCGCCA CCACCATCAA CGTGCCCGAC ACCGTGGGTT ACGCCATTCC CGAGCTGTAC
GGCAACTTCA TCAAGAACCT TCGCGAGCGC ATTCCCAACA GTGACAAGGC CATCTGGTCC
GTGCACTGCC ACAACGATCT GGGCATGGCG GTCGCCAACT CGCTGGCGGG TGTGAAGATC
GGCGGGGCAC GCCAGGTGGA GTGCACCATC AACGGCCTGG GCGAGCGTGC GGGCAATTGT
TCGCTGGAGG AGGTGGTGAT GGCCGTGAAG ACGCGGCGCG ACTACTTCGG CCTGGACGTC
GGCATTGATA CCCAGCACAT CGTGGCCGCC AGCCGCATGG TCAGCCAGAC CACCGGCTTT
GTGGTGCAGC CCAACAAGGC CGTGGTGGGC GCCAATGCGT TCGCCCACGC CTCGGGCATC
CACCAGGACG GCGTGCTCAA GGCGCGCGAC ACGTACGAGA TCATGCGCGC CGAGGACGTG
GGCTGGAGCG CGAACAAGAT CGTGCTGGGC AAACTCAGCG GCCGCAATGC GTTCAAGCAA
CGTCTGCAGG AACTGGGCGT CCAGTTGGAG AGCGAAGGCG AAATCAACGT GGCGTTTGCC
AAATTCAAGG AACTCGCCGA CCGCAAGAGC GAGATCTTTG ACGAGGACAT CCTGGCACTC
GTGAGCGACG AAAGCGTGAC CAGCGAGAAG GAGCAGTTCG GCTTCGTGTC CCTGGCGCAG
CACAGCGAGA CGGGCGAACG GCCCGAGGCG ACCATCGTGT TCACCGTGGA CGGCAAGGAA
GTCCGCAGCT CCTCGGAGGG CAACGGCCCG GTCGATGCCT CGATGAAGGC CATCGAGGCG
CATGTGCGCA GCGGTGCCGA GATGGTGCTG TACTCGGTGA ACGCCATCAG TGGCTCCACC
GAAAGCCAGG GCGAAGTCAC CGTGCGGTTG CAGAGCGCCG GCCGGGTGGT GAATGGCGTA
GGGGCCGACC CCGACATCGT GGTGGCATCG GCCAAGGCCT ACCTCAGTGC CCTGAATAAA
TTACAAAGTA AAGCTGAGCG CGTGGCAGCG CAGGGCTGA
|
|---|
| Protein sequence | MTDKLIIFDT TLRDGEQSPG ASMTRDEKLR IARQLERLRV DVIEAGFAAS SNGDFESVQA
IARAVKDSTV CSLARANDRD IARAAEALKE ANRARIHTFI ATSALHMEKK LRMTPEQVLE
QARQAVRFAR NLVEDIEFSP EDGYRSDPDF LCRVIETVIA EGATTINVPD TVGYAIPELY
GNFIKNLRER IPNSDKAIWS VHCHNDLGMA VANSLAGVKI GGARQVECTI NGLGERAGNC
SLEEVVMAVK TRRDYFGLDV GIDTQHIVAA SRMVSQTTGF VVQPNKAVVG ANAFAHASGI
HQDGVLKARD TYEIMRAEDV GWSANKIVLG KLSGRNAFKQ RLQELGVQLE SEGEINVAFA
KFKELADRKS EIFDEDILAL VSDESVTSEK EQFGFVSLAQ HSETGERPEA TIVFTVDGKE
VRSSSEGNGP VDASMKAIEA HVRSGAEMVL YSVNAISGST ESQGEVTVRL QSAGRVVNGV
GADPDIVVAS AKAYLSALNK LQSKAERVAA QG
|
|---|
| |