Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_1722 |
Symbol | |
ID | 4672674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 1790355 |
End bp | 1792139 |
Gene Length | 1785 bp |
Protein Length | 594 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639838811 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_985988 |
Protein GI | 121594092 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.031974 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGATT CGAATCATAG CGCGCCAAAG ACCACTTTGC AGCAAGCTCC GCAGTCTCTT TCGCTGTGGG AGCGGTTGCG CAGGCTCCAT CCGTACTTCG GCCACCAGCG GCTGGCATGG ACCATGGCGG TGTTGGCGAC GATCGTCGCG GCCGCCACCG AGCCATTGAT TCCCGCGCTT CTCAAACCAT TGCTGGACCA GGGTTTTACA GAAGGATCGC TGGAGCTGTG GATGGTTCCC GTGGCCATCA TCGGCGTCTT CCTGGTGCGT GGGCTGGCCC AGTTCACGGG ACAGTATGCC CTCACGCGCA TCGCCAACGA GGGCATGCTG CGCCTGCGCA CGGCGCTGTT CGAGCGGCTG CTGGCAGCGG ACATGGGGCT TTTCCATCGC CAGTCGGCCA GCGCACTGTC CAACACCGTG GTGTATGAGG TGCAGACCGG GTTCACCTCG CTGGTCCAGG CGCTGCTGGG CCTGTCGCGC GACGGTTTCA CGCTGGTCGC CCTGCTGGGT TATCTCATCT ACCTGAACTG GCAACTCACG CTGATTGTGG CGGTGCTGGT GCCGGGGGTG GCCTGGGTGA TGAAGACGCT CTCGCGGCGC CTGTACAAGA TCACTAAAAG CAGCCAGCAG GCCACCGACG ACCTGGCCTA TGTGGTCGAA GAGAACGTAC TGGCCCACCG TGTGGTACGC CTGCACGGCG CCCAGGTCGA GCAGGCCGCG CGCTTTGACA CGCTGAGCCA GCGCCTGCGC CGCCTGGCCA TCAAATCCAC GATCGCCTCG GCCGCCATGA CGCCCACCAC GCAGTTGCTG TCCGCGGGCG CGCTGTCCAC CGTGATCTGC ATCGCCTTGT GGCAAAGCCA TGGCAACGGT GCCAAGGACG TGACCGTGGG CGGTTTCGCC TCGTTCATAG CGGCGATGCT GATGTTGATA GCGCCCATCC GCCGCATGGC CGACATCGCC AACCCCGTCA CGCGCGGCGT GGCGGCGCTG GAACGGGGTC TGGCCCTGCT GCACGAGGCG CCGGCCGAGA CAGGCGGCAC GCACACCGCG CAGCGCGCCC AGGGGGCGAT TGCCCTGCGC AACGTGACCG TGTCCTTCCG TCCCGACCAG GCGCCCGCAC TGGACGCCGT GAGCCTGGAC ATTCGCCCGG GCGAAGTGGT GGCGTTCGTC GGCCCCTCCG GTGCCGGCAA GACCACGCTG GTGAACTTGC TGCCGCGCTT TCTCAGCCCC AGCAGCGGCC AGGTGCTACT GGACGGCGTG GCGACCGACC AGTGGGCGTT GCCCAGCCTG CGCGCGCAAT TCGCCATGGT GAGCCAGGAC GTGGTGATGT TCAACGACAG CGTCGCCGCC AACGTGGCGC TGGGCGCTGC CGTGGACGAG CAACGTGTGC AGCACTGTCT GGACGCAGCG AACCTCGCCG AGTACGTGGT CAGCCTCCCG CAGGGTATGC ACACTGTGGT GGGGCACAAC GCGACGCAGC TGTCGGGCGG ACAGCGGCAG CGGCTGGCCA TCGCGCGGGC GCTCTATCGC GACGCTCCGG TGCTCATCCT CGACGAGGCC ACCTCGGCAC TGGATACCGA ATCCGAACGC CTGGTACAGC AGGCCCTGCA GCGTCTCATG CAAGGGCGCA CCACGCTGGT GATTGCCCAC CGCCTCTCCA CCATCGAACA CGCGGACCGC GTGGTGGTCA TGGAGCAAGG GCGCATCGTC GAGCAAGGCC CCCACGCGGA GCTGCTGACC CGGGGCGGCC TGTACGCGCG CCTGCGCGCA CATGGCGGCG CGTGA
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Protein sequence | MQDSNHSAPK TTLQQAPQSL SLWERLRRLH PYFGHQRLAW TMAVLATIVA AATEPLIPAL LKPLLDQGFT EGSLELWMVP VAIIGVFLVR GLAQFTGQYA LTRIANEGML RLRTALFERL LAADMGLFHR QSASALSNTV VYEVQTGFTS LVQALLGLSR DGFTLVALLG YLIYLNWQLT LIVAVLVPGV AWVMKTLSRR LYKITKSSQQ ATDDLAYVVE ENVLAHRVVR LHGAQVEQAA RFDTLSQRLR RLAIKSTIAS AAMTPTTQLL SAGALSTVIC IALWQSHGNG AKDVTVGGFA SFIAAMLMLI APIRRMADIA NPVTRGVAAL ERGLALLHEA PAETGGTHTA QRAQGAIALR NVTVSFRPDQ APALDAVSLD IRPGEVVAFV GPSGAGKTTL VNLLPRFLSP SSGQVLLDGV ATDQWALPSL RAQFAMVSQD VVMFNDSVAA NVALGAAVDE QRVQHCLDAA NLAEYVVSLP QGMHTVVGHN ATQLSGGQRQ RLAIARALYR DAPVLILDEA TSALDTESER LVQQALQRLM QGRTTLVIAH RLSTIEHADR VVVMEQGRIV EQGPHAELLT RGGLYARLRA HGGA
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