Gene Ajs_1722 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_1722 
Symbol 
ID4672674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp1790355 
End bp1792139 
Gene Length1785 bp 
Protein Length594 aa 
Translation table11 
GC content67% 
IMG OID639838811 
Productlipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 
Protein accessionYP_985988 
Protein GI121594092 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02203] lipid A export permease/ATP-binding protein MsbA 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.031974 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAGATT CGAATCATAG CGCGCCAAAG ACCACTTTGC AGCAAGCTCC GCAGTCTCTT 
TCGCTGTGGG AGCGGTTGCG CAGGCTCCAT CCGTACTTCG GCCACCAGCG GCTGGCATGG
ACCATGGCGG TGTTGGCGAC GATCGTCGCG GCCGCCACCG AGCCATTGAT TCCCGCGCTT
CTCAAACCAT TGCTGGACCA GGGTTTTACA GAAGGATCGC TGGAGCTGTG GATGGTTCCC
GTGGCCATCA TCGGCGTCTT CCTGGTGCGT GGGCTGGCCC AGTTCACGGG ACAGTATGCC
CTCACGCGCA TCGCCAACGA GGGCATGCTG CGCCTGCGCA CGGCGCTGTT CGAGCGGCTG
CTGGCAGCGG ACATGGGGCT TTTCCATCGC CAGTCGGCCA GCGCACTGTC CAACACCGTG
GTGTATGAGG TGCAGACCGG GTTCACCTCG CTGGTCCAGG CGCTGCTGGG CCTGTCGCGC
GACGGTTTCA CGCTGGTCGC CCTGCTGGGT TATCTCATCT ACCTGAACTG GCAACTCACG
CTGATTGTGG CGGTGCTGGT GCCGGGGGTG GCCTGGGTGA TGAAGACGCT CTCGCGGCGC
CTGTACAAGA TCACTAAAAG CAGCCAGCAG GCCACCGACG ACCTGGCCTA TGTGGTCGAA
GAGAACGTAC TGGCCCACCG TGTGGTACGC CTGCACGGCG CCCAGGTCGA GCAGGCCGCG
CGCTTTGACA CGCTGAGCCA GCGCCTGCGC CGCCTGGCCA TCAAATCCAC GATCGCCTCG
GCCGCCATGA CGCCCACCAC GCAGTTGCTG TCCGCGGGCG CGCTGTCCAC CGTGATCTGC
ATCGCCTTGT GGCAAAGCCA TGGCAACGGT GCCAAGGACG TGACCGTGGG CGGTTTCGCC
TCGTTCATAG CGGCGATGCT GATGTTGATA GCGCCCATCC GCCGCATGGC CGACATCGCC
AACCCCGTCA CGCGCGGCGT GGCGGCGCTG GAACGGGGTC TGGCCCTGCT GCACGAGGCG
CCGGCCGAGA CAGGCGGCAC GCACACCGCG CAGCGCGCCC AGGGGGCGAT TGCCCTGCGC
AACGTGACCG TGTCCTTCCG TCCCGACCAG GCGCCCGCAC TGGACGCCGT GAGCCTGGAC
ATTCGCCCGG GCGAAGTGGT GGCGTTCGTC GGCCCCTCCG GTGCCGGCAA GACCACGCTG
GTGAACTTGC TGCCGCGCTT TCTCAGCCCC AGCAGCGGCC AGGTGCTACT GGACGGCGTG
GCGACCGACC AGTGGGCGTT GCCCAGCCTG CGCGCGCAAT TCGCCATGGT GAGCCAGGAC
GTGGTGATGT TCAACGACAG CGTCGCCGCC AACGTGGCGC TGGGCGCTGC CGTGGACGAG
CAACGTGTGC AGCACTGTCT GGACGCAGCG AACCTCGCCG AGTACGTGGT CAGCCTCCCG
CAGGGTATGC ACACTGTGGT GGGGCACAAC GCGACGCAGC TGTCGGGCGG ACAGCGGCAG
CGGCTGGCCA TCGCGCGGGC GCTCTATCGC GACGCTCCGG TGCTCATCCT CGACGAGGCC
ACCTCGGCAC TGGATACCGA ATCCGAACGC CTGGTACAGC AGGCCCTGCA GCGTCTCATG
CAAGGGCGCA CCACGCTGGT GATTGCCCAC CGCCTCTCCA CCATCGAACA CGCGGACCGC
GTGGTGGTCA TGGAGCAAGG GCGCATCGTC GAGCAAGGCC CCCACGCGGA GCTGCTGACC
CGGGGCGGCC TGTACGCGCG CCTGCGCGCA CATGGCGGCG CGTGA
 
Protein sequence
MQDSNHSAPK TTLQQAPQSL SLWERLRRLH PYFGHQRLAW TMAVLATIVA AATEPLIPAL 
LKPLLDQGFT EGSLELWMVP VAIIGVFLVR GLAQFTGQYA LTRIANEGML RLRTALFERL
LAADMGLFHR QSASALSNTV VYEVQTGFTS LVQALLGLSR DGFTLVALLG YLIYLNWQLT
LIVAVLVPGV AWVMKTLSRR LYKITKSSQQ ATDDLAYVVE ENVLAHRVVR LHGAQVEQAA
RFDTLSQRLR RLAIKSTIAS AAMTPTTQLL SAGALSTVIC IALWQSHGNG AKDVTVGGFA
SFIAAMLMLI APIRRMADIA NPVTRGVAAL ERGLALLHEA PAETGGTHTA QRAQGAIALR
NVTVSFRPDQ APALDAVSLD IRPGEVVAFV GPSGAGKTTL VNLLPRFLSP SSGQVLLDGV
ATDQWALPSL RAQFAMVSQD VVMFNDSVAA NVALGAAVDE QRVQHCLDAA NLAEYVVSLP
QGMHTVVGHN ATQLSGGQRQ RLAIARALYR DAPVLILDEA TSALDTESER LVQQALQRLM
QGRTTLVIAH RLSTIEHADR VVVMEQGRIV EQGPHAELLT RGGLYARLRA HGGA