| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1548 |
|---|
| Symbol | |
|---|
| ID | 4671626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 1600115 |
|---|
| End bp | 1600738 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639838635 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_985817 |
|---|
| Protein GI | 121593921 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00328644 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0561718 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGGG CCGTCGCTGT CATCTCCCTC GTTCTGCTGC TCATACTGGT GCTGTACGTG
CCTGCCGTGC ATCCGCCCGA GCGCTTCCTG GAGCAAATGC GCAGCGAGCA CCAGGTGGCG
ATTGAATTCT GGGGAGCGGA ACCCGCCTAC CGGATGCTCG ATCGCGCCAT ACGTCTGCAG
TCCAATGCCG CCGAAGCCAG TCCTCTCCCG GCGCTGAGGG ACATGCCCAA GAGCCAAGGC
ACCAACCAAG CGGTCGCCTC CGAGATGAGA TCCGTCAATC AACGCCTGTT CAACAACGCC
TACTTTCGCT CGGTCGATGC GCTGCTGATG CTCGCAAGCT ATCGCCTGTC CGGTTTGCTG
GAATGGCTGC CTTGGCTGAT CCCCCTGGTG CTGGCCGCCA GCACTGACGG CTTCTTGCTA
CGCGTGGTTC GGTCCAAGGA GTTTCTGCTG CACGATCCGG AGATGTTCGC CGTGTGGTGC
TCCCTGTTGA TCATCACCGG CTGCGCGACG GTGGTCGCAT TCGTGCTACC TGTCCAGTTG
CATCCAGCCA TGCTGGCCGC TTCGCCCATT GCGATGACCG TGCTGCTGGG CCGTGCGATC
ACGCATTTTC ATCGGCGCGC ATGA
|
|---|
| Protein sequence | MIRAVAVISL VLLLILVLYV PAVHPPERFL EQMRSEHQVA IEFWGAEPAY RMLDRAIRLQ
SNAAEASPLP ALRDMPKSQG TNQAVASEMR SVNQRLFNNA YFRSVDALLM LASYRLSGLL
EWLPWLIPLV LAASTDGFLL RVVRSKEFLL HDPEMFAVWC SLLIITGCAT VVAFVLPVQL
HPAMLAASPI AMTVLLGRAI THFHRRA
|
|---|
| |