| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1536 |
|---|
| Symbol | |
|---|
| ID | 4672993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 1592338 |
|---|
| End bp | 1592979 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639838623 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_985805 |
|---|
| Protein GI | 121593909 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02747] type IV conjugative transfer system lipoprotein TraV |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.418133 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGC GCATCGCACG CGCCGTCGCT GCCGCCCTGC TACTGCCGCT GGCGGGCTGC
ATGAACATGT CGGGACTCTC CGGCAGCTCC AAATACGCCT GCGCCGCGCC CGAGGGCGTG
GCCTGCGACT CGGTGTCGGG CACCTACACC AACGCCCTGC ACAACAATCT GCCGAGCCAA
CAGGCATCGG CGTTCCGCAG CGAGTCTCGG GAAGGTGTTC CGCAGGAGCC CGCCGCATCG
CCCGTGCGAC AGCCGATTGC CGCGGCACCG CGCAGCATGG CCGACGGCGA CGCGGAAGGC
ACCCCTGCGC TGGCGCTGCG CTCCCAGGCC CGGGTTCTGC GCCTATGGAC CAAGCCCTGG
GAGGACGCCG ACGGCGATCT CTGGGACCAG GGGTATGTCT ACGTGCAGGT CGATGCCGGC
CGCTGGCAGA TCGACCATGT GCGCCAGCGC ATCCGCGATC AATATGCACC GTTGCGCCCT
CCACCAGCGG CTGCACCCGC CACGGCATCC GGTGGCGCGC CAGCACCTTC CGGGCCTGAC
GCCGCCGTCC CGGTTGAAGG CGCCATCCAA CGCCCCGCCT CGTTCAACGG CTTCCCGTCA
CTTGCCCAAC CGCCGGCAGG CCTGGGCCCT CGACAGCAGT GA
|
|---|
| Protein sequence | MNARIARAVA AALLLPLAGC MNMSGLSGSS KYACAAPEGV ACDSVSGTYT NALHNNLPSQ
QASAFRSESR EGVPQEPAAS PVRQPIAAAP RSMADGDAEG TPALALRSQA RVLRLWTKPW
EDADGDLWDQ GYVYVQVDAG RWQIDHVRQR IRDQYAPLRP PPAAAPATAS GGAPAPSGPD
AAVPVEGAIQ RPASFNGFPS LAQPPAGLGP RQQ
|
|---|
| |