| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1535 |
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| Symbol | |
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| ID | 4673327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 1589748 |
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| End bp | 1592330 |
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| Gene Length | 2583 bp |
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| Protein Length | 860 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639838622 |
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| Product | hypothetical protein |
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| Protein accession | YP_985804 |
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| Protein GI | 121593908 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.324807 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTTT CCTCCACCGA TGCACGACCC GGCAGCGCCC GCGCCGTGCC GCTGTTTCCG
TTCGGCATGG CTGCAGACAC GCCCGCTGAG CAGTTCGCCG GCTGGCTGCC CTACTCCGCC
TACCTCGCTG ACGAGAAGAT TTTCGCGAAC CGCGACGGCA TGGGCTTCAT GCTCGAAGTC
ATGCCGCAGT CGGGCGCGGA CGAACGCATG GCCGAGGTGC TGGTCTCGCT CTACGCCAAC
TGCCCGCCGG GCACCGGCCT GCAGTTTCAC CTGTTCGCCT CACCGCACGT CCGCCATCAA
CTGCGCCAGT ACACCAACCT GCGCGTCGAG GACGAGGACC AGGCGGAGAA GGCACGCGAG
TGGGGCCGTC CCGTTCCCAA CGAAAACCTG TTTCGCAAGC TGGCGCGCCA ACGCGTCAAC
CATTTGCTGC ACGGCACCCA GTCCTCGCTC ACGGCCGGCT TCCACTACAC GCTGCGCGAC
TTCCGGCTGA TGCTCAGCGT GGTGTTTCCC GGCAGTGCGG CCGACCTGAA CCGGCGGGAG
GCCTTGCTGG CATTGCGCGA TTCGATGGCG GCCACGCTTC GCTCGGCCAT GCTGCCCAAC
CGGGTCTGTG ACGCGGCGGA CCTGATCAAC TGGTGCGCGC TATTCACCAA CCCCGACCGG
ATCGCGCATT CGGATGCCGA GGATCTGAAC CACGACGACG ACCACTGGCT GCGCTACGAC
GACGGCCGCG AGATCCGCGA CCAGATCGTG GACTTCGACA CCATCCAGGA CCCGCACCCG
TCAGGCATCA CGCTCTGGAA GGAAACCAGC GCCGAGGTGT TGGAAGCGCG CTTCTATTCG
ATCAAGAGCT TCCCCGAGCG ATTCGCCCTC TGGCAGATGG GTTCTCTCAT CGGCGACCTG
ATGCAGCCGG CGCTGCAGTA CAGCGCACCC TTCCTGATCA CGCTGGGCGT GCACATCCTC
GACCCGAACG CCACGAAGTC CATCATCACG GCGAACCACG TGCGCGCCAC GCAGAACGCC
AAATCCAAGA TGGCCGATGT GATGCCGGAC GTGCGCAAGA AGCTCGACGA CTGGTCGGCA
GCGGCCAACG CCATCGACAC CGGCGGCAGC CTGGTGAGCC TATATCACCA GCTCGCCATC
TTCACGTCGC CGGACAAGGC CGCCTCGGCG CACGAGGCCG CGAACGCCAT CTGGCGGGCG
CGTGGCTTCC AGCTCAATGC CGACGCCTAC ATGCACCGCC AAGCGCTGCT GGCCAGCCTG
CCGATGACGC TGACCCCGAG GTTCCACAAG GACCTCGCCA AGATGCGCCG CGTCACGCGC
AAGACCATGG CCAATGCCAT CCACATGGCG CCGCTGATCG CCGAGTGGCG CGGCACGCGC
ACCCCGGCCC TGGTGTTCGG CGGGCGGCGC GGCCAGGTCA TGACGCTGGA CCTGTTCGAC
AACGACCTGG GCAACTACAA CTTCGCGATC ATCGGCGCGC CCGGGTCGGG CAAGTCCGTG
CTGATGAACG AGCTGGCCTG GTCGTACCGG GCGATCGGCG CCAAGGTCTG GATGCTGGAC
CTGGGCCGCA GCTTCGAAAA GCTGTGCCGC AAGGCCCAGG GCACCTACAT CGAGTTTCGG
CCCGACGTGG ACATCTGCCT GAACCCGTTC ACCATCGTGC ACGACATCAA CGAGGACATC
GACATGCTGG TGCCGGGCAT CAGCAAGATG TGCTCGATGC AACATGCGCT GGACGAGGTC
CAGTACAAGG CGATCTCCGC CATGGTGCTC AAGCTCTGGC GCGAGCACGG CAACGACCTG
ACGATCACCG GCCTGCGCGA CGCCTTCAAG ACCGGGACCA TCGAGGAGCT CGGGGTCACG
GGCGACCAGC GCATCCGGGA TCTGGCCATC ATGCTCAACC CCTATGCCAA GGGCGGGCAG
TACGAGCGCT TCTTCGAGGG CCGTGCCAAC GTCGATTTCA GCAACGACTT CATCGTCATC
GAGAACGAGG AATTGAAGCG CCGGCCCGAC CTGCACGCCG TCGTCAACAT CCTGCTGCTG
CACCAGATCA CCGGCGAGAT GTATCTGACG CGCAACCGGC GCAAGGTGCT GTTCATCGAC
GAACTCAAGC AGCAACTCGG CGACATCGGC GCCGACGACC CGGTCAAGGC TGCCGTGGTC
GAGGAAGCTG CCCGGCGGGC GCGCAAGTAT GGCGGCGCCC TGGGCACGGC CACGCAGTCT
GCCGACGATT ACTACGGCAG CGCGCAGATG GAAGCGGCTT TCAACTGCTC GGACTGGGTG
TTTCTGCTGC GCCAGAAGCC CGAATCCATC GAGATGCTGG ATCGCAAGGG GCGCCTGGCC
ATGGACGAGC CCAAGAAGCG GCTGCTCAAT TCGCTGCGCA CCGAGGCCGG GGCGTTCTCG
GAGCTGTACA TCTCGTCGCC CGTGGGCGAA GGCGTGGCTC GCAATATCCT GGATCCGGCC
ACGCACCTGC TGTTCTCGAA CAAGCTGGAG GACAACGCGC CCATCGATGC GCTGCGCGCC
CAAGGGTTGT CCATCGATGA GGCCATTGCC GAGCTGCTGC GCCAGCGGGG ACATGCGCTA
TGA
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| Protein sequence | MPFSSTDARP GSARAVPLFP FGMAADTPAE QFAGWLPYSA YLADEKIFAN RDGMGFMLEV
MPQSGADERM AEVLVSLYAN CPPGTGLQFH LFASPHVRHQ LRQYTNLRVE DEDQAEKARE
WGRPVPNENL FRKLARQRVN HLLHGTQSSL TAGFHYTLRD FRLMLSVVFP GSAADLNRRE
ALLALRDSMA ATLRSAMLPN RVCDAADLIN WCALFTNPDR IAHSDAEDLN HDDDHWLRYD
DGREIRDQIV DFDTIQDPHP SGITLWKETS AEVLEARFYS IKSFPERFAL WQMGSLIGDL
MQPALQYSAP FLITLGVHIL DPNATKSIIT ANHVRATQNA KSKMADVMPD VRKKLDDWSA
AANAIDTGGS LVSLYHQLAI FTSPDKAASA HEAANAIWRA RGFQLNADAY MHRQALLASL
PMTLTPRFHK DLAKMRRVTR KTMANAIHMA PLIAEWRGTR TPALVFGGRR GQVMTLDLFD
NDLGNYNFAI IGAPGSGKSV LMNELAWSYR AIGAKVWMLD LGRSFEKLCR KAQGTYIEFR
PDVDICLNPF TIVHDINEDI DMLVPGISKM CSMQHALDEV QYKAISAMVL KLWREHGNDL
TITGLRDAFK TGTIEELGVT GDQRIRDLAI MLNPYAKGGQ YERFFEGRAN VDFSNDFIVI
ENEELKRRPD LHAVVNILLL HQITGEMYLT RNRRKVLFID ELKQQLGDIG ADDPVKAAVV
EEAARRARKY GGALGTATQS ADDYYGSAQM EAAFNCSDWV FLLRQKPESI EMLDRKGRLA
MDEPKKRLLN SLRTEAGAFS ELYISSPVGE GVARNILDPA THLLFSNKLE DNAPIDALRA
QGLSIDEAIA ELLRQRGHAL
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