Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_1482 |
Symbol | |
ID | 4670918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 1536187 |
End bp | 1537800 |
Gene Length | 1614 bp |
Protein Length | 537 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639838583 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_985765 |
Protein GI | 121593869 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG0845] Membrane-fusion protein [COG5569] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0952522 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAACAG GTTTCAAGGC CGGCGTATTC CTGGCTATCG TCGCCGCAGG GTTGGCGGCG GGTGGTGGCT ATTGGATGGG ACAGCGCCAA TCAGAAGCCC GCAGTGGTGA CCAGACTGCG TCGCAGGGCG CCTCTGCCGG TCCTACCAAG AAGGAGCGCA AGGTACTTTT TTACCGTAAC CCGATGGGGC TGCCCGACAC ATCTCCCACA CCGAAAAAAG ATCCAATGGG GATGGACTAC ATCGCGGTCT ACGAGGGCGA GCAGGAAGAA GCAGAAACCA ACTCCAATCA AATTCGCATC AGCACCGAAA AGATTCAGAA ACTCGGCGTT CGCACCGAGG CGGTGAGTCT GCGCTCTCTG GACAAGGTGG TGCGTGCCGC CGGACGCATC GAACCAGACG AGCGCCAGAC CTTCACCATC GCTGCCAAAT TCGAGGGCTA TGTTGAGCGT CTGCATGCCA ACGTCACCGG ACAGGCGGTG AGCAAGGGGC AGCCTCTCTT CGAGGTCTAT AGCCCCGAAC TGGTGTCTGC CCAGCGCGAG TACGCCATCG CGGCACAGGG TGTCGATGCG TTGAAGGATG CCTCTGGTGA GACACAGCGT GACATGCGTG AGCTGGCCGA CTCCAGCCTG GCGCGGCTTC GCAATTGGGA TATCTCGGAC GAGCAGGTCA AGACCTTGGC CAAATCCGGC GACGCACGCC GCACGCTGAC ATTTCGCTCA CCAGTGGCAG GGATCATCAC CGACAAGAAG GCCATCCAAG GTATGCGATT CATGCCGGGC GAAATGCTCT ACCAAGTCGC CAACCTGTCC TCGGTCTGGG TCATCGCCGA TGTCTTCGAG CAAGACATCG GCTTGGTCAA GTCGGGGGGC AAGGCCAAGG TGCAAATCAA TGCCTACCCA GACAAGGTGT TCCAGGGGAC GGTTAGCTAT GTGTATCCCA CCCTGAAGCC TGAAACCCGA ACGGTGCAGG TGCGCGTGGA CTTGTCAAAC ACGGGTGGCT TGCTCAAGCC TGGCATGTTT GCCCAGGTGG AACTTCCGAC CGCCAGCAAG GGGGCGGTTT TGACGGTGCC GACTTCGGCC GTGATTGACA GCGGCACGCG CCAGATCGTC CTGGTGCAGC TCAAGGAGGG ACGATTCGAA CCCCGCGATG TCAAAGTGGG CGCACGCAGC GACGACCGCA TTGAAGTCAC CGAGGGCGTT CGCGAGGGTG AGCAGGTGGT CATCGCTGCC AATTTCCTGA TCGATGCAGA AGCCAACCTC AAGGCGGCCG TGGGCGGCTT TGGGCACTCC TCACATGGAG CTAAGTCGGA AGCACAAGGC ACCCCTGATG CGAGCAAGCC CGCTGCCTCC GTCGGGCACC AAGGTGAGGG CAGGGTGGAG GAGTCTGATG CGAAGGCCGG CACGGTGACC ATTGCCCATG GTCCCATACC CTCCCTCAAA TGGCCTGCAA TGTCCATGGA GTTCAAGGTC TCCAACAATG GGCTGATGGC GGGCTTGCAA CCTGGCGCAG CGGTGGTCTT CGAGTTCGTT GAGCGTGGAC AGGGTGAATG GGTGGTCACC TCCGTGAAAC CCATGGGCAA AGCGGCGGCC ACTCCGCACG CCGACCATAA CTGA
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Protein sequence | MTTGFKAGVF LAIVAAGLAA GGGYWMGQRQ SEARSGDQTA SQGASAGPTK KERKVLFYRN PMGLPDTSPT PKKDPMGMDY IAVYEGEQEE AETNSNQIRI STEKIQKLGV RTEAVSLRSL DKVVRAAGRI EPDERQTFTI AAKFEGYVER LHANVTGQAV SKGQPLFEVY SPELVSAQRE YAIAAQGVDA LKDASGETQR DMRELADSSL ARLRNWDISD EQVKTLAKSG DARRTLTFRS PVAGIITDKK AIQGMRFMPG EMLYQVANLS SVWVIADVFE QDIGLVKSGG KAKVQINAYP DKVFQGTVSY VYPTLKPETR TVQVRVDLSN TGGLLKPGMF AQVELPTASK GAVLTVPTSA VIDSGTRQIV LVQLKEGRFE PRDVKVGARS DDRIEVTEGV REGEQVVIAA NFLIDAEANL KAAVGGFGHS SHGAKSEAQG TPDASKPAAS VGHQGEGRVE ESDAKAGTVT IAHGPIPSLK WPAMSMEFKV SNNGLMAGLQ PGAAVVFEFV ERGQGEWVVT SVKPMGKAAA TPHADHN
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