| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1374 |
|---|
| Symbol | |
|---|
| ID | 4674361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 1442055 |
|---|
| End bp | 1443284 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639838485 |
|---|
| Product | major facilitator superfamily transporter |
|---|
| Protein accession | YP_985667 |
|---|
| Protein GI | 121593771 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATA ACGGTACAGC CTCCATCGGA GGCGCTTCGG ACGAACTGCC CGAGAAAGTG
CAGAGCGGAA ACATCTGGCG CCTTTCCATC GCGCAGGCGC TGGCGGGGGC CAACTCGACC
GTGCTTTACG CCACCGGGGC AATCGTCGGC GACATGCTCG CGCCGGTTCC CGTGTTGGCT
ACCTTGCCCA TCTCGATCTT CGTGGTGGGC ATGGCCGCGT GCATCTTGCC TGCGGGAGCG
ATAGCCCGGC GTCACGGGCG TCGCACAGCC TTCCTCGTGG GAACCGGGGC CGGCGTGCTG
ACTGGGCTGC TGGGCATGCT CGCGGTCATC ATCGGCTCGT TCTGGCTGTT CTGCCTGGCA
ACCTTCCTGG GTGGCGGCTA CGCCGCCGTA GTGCTGACCT TCCGATTCGC GGCGGCTGAC
GGCGTGGCAC CGGATCGGCG TGCGCGTGCG CTATCGCTCG TCATGGCGGG CGGCGTTGCG
GCCGGAGTCG TGGGGCCGCA GCTCGTGAAC TACACGATGA ACATGTGGCC GCCCTACATG
TTTGCGGCCA CCTTCCTCGC ACAAGGCGCT GTCGCAGCGG TGTCGGCGCT CATCCTGCTG
GGGGTTCGGT TGCCGATGCC CACGGCGGCC GAGGTGGCCG GAGGCAGGCC GCTGGCGGTG
ATTGCGCGAC AACCGCGCTT CGTTGCGGCG GCCATCACCG GCGCGGTGAC CTACATGCTG
ATGAACTTCC TGATGACGGC CGCGCCGCTG GCGATGCACA TGTGCGGCCA TTCGCAGGAA
TCGGCCAACC AGGGAATTCA ATGGCACGTC ATCGCCATGT ACGGGCCGAG CTTCTTTACC
GGAAGCCTGA TCAAACGCTT CGGCGCGGGC CGCGTGGCAA CCGTGGGTCT GCTGCTGACC
GGGCTCTCCG CTGCCGTGGG CCTTGCAGGT ATCGACGTCG CCCATTTCTG GGCAACGCTG
ATCCTGCTGG GCCTGGGGTG GAACTTCGGC TTTCTGGGAG CATCCGCGAT GGTCCTGGAA
TGCCACCGCC CCGAGGAAAA GACACGGGTT CAATCCCTCA ACGATTTCAT CGTCTTTGGA
TTGATGGCCG TAGGCTCCTT CTTGTCCGGT GGATTGCTCA GTACCTATGG CTGGACCACG
GTACTCTGGG TGTCTTTCAT TCCTCTGGCA TTGGCCGTGC TGTCGCTGGC GGTCGCCTTG
AGGAGGAAAC CCGTATCTCT CGCTGGCTAA
|
|---|
| Protein sequence | MTDNGTASIG GASDELPEKV QSGNIWRLSI AQALAGANST VLYATGAIVG DMLAPVPVLA
TLPISIFVVG MAACILPAGA IARRHGRRTA FLVGTGAGVL TGLLGMLAVI IGSFWLFCLA
TFLGGGYAAV VLTFRFAAAD GVAPDRRARA LSLVMAGGVA AGVVGPQLVN YTMNMWPPYM
FAATFLAQGA VAAVSALILL GVRLPMPTAA EVAGGRPLAV IARQPRFVAA AITGAVTYML
MNFLMTAAPL AMHMCGHSQE SANQGIQWHV IAMYGPSFFT GSLIKRFGAG RVATVGLLLT
GLSAAVGLAG IDVAHFWATL ILLGLGWNFG FLGASAMVLE CHRPEEKTRV QSLNDFIVFG
LMAVGSFLSG GLLSTYGWTT VLWVSFIPLA LAVLSLAVAL RRKPVSLAG
|
|---|
| |