| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1332 |
|---|
| Symbol | |
|---|
| ID | 4674661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 1399789 |
|---|
| End bp | 1401114 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 639838443 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_985627 |
|---|
| Protein GI | 121593731 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.592234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.169457 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACCGAA GAAGAATCAT GCCGGCCGGG CGCTGGCATC ACGCCGCCCG CGCCACCCTG
GCGACCGTAG CCAGTACGGC ACTCACCGCA GCGCTGATGG GCGTCGCGAT CGAAGCGCGT
GCGCAGACCC CTGCTGCACC CAGCGAGCCG ACCCCGCCCA CGCTGCGAGC AGCCTTCGAA
ACCGCCTGGG CGCGGCAGCC CGAAGCGCAA GCGCTGGCAG CGCGGCGCGA CGCGGCACGC
GCGCAGCGGG ACGCGGCCCA AGCATGGACG CCCGAGCCAG TGGCGATGGA GCTGTCCACC
AAGACGGACC GCCTGAACCG AAACCTCGGC ACCCGTGAGG TCGAGGTCGG CGTGGCCATC
CCATTGTGGC TGCCGGGCGA ACGTGGCCGC AGCCAGGCCC TGGCCGACGC CGAGGGCCGT
GCCATCGAGA GCCGTACCAC GGCGGCACAG CTGCGCGTGG CTGCCGCTGT GCGCGAAGCG
TGGTGGGCGT GGCAGCGGGC CCGTGTGGAG CTCGATGCCG CACGCGGCCA GCTCGACAAC
GTTCAACGCA TTGCCGCCGA TGTCGGCAAG CGGCTCAGAG CCGGTGACCT GGCCCGTGCC
GACCAGCACC AGGCCGACGG CGCCGTCGCG GCGGCCGAAG CGGCCGTGGC GCAGGCCGAA
GGCGCGCTCA CGGCCGGCTG GCAGCAGCTT CGTCCCCTCG TCGCCATGCC AGCGGCTGCC
GCACCCAGCG CCGCGCCCGG CGCCGACGCC GAACCCGAGC CGTCCACGGC GACCGGTCCT
GCAGACGGCC TGGACACGCA TGCCGAACTG CTCTCGTTGA AGGACCGCTC CGCCGTCGCC
GACGGCGTGG CTGCACTCGC GGCCACGCAG TCTCGCGCCA GCCCGGAACT CACCATCGCC
GCCACCCGCG ATCGGGGCAC TTACGGAGAG TCCTACCAGC AGACCTTCAC GGTCGGTGTG
CGCATCCCCT TCGGCGCCGG TCCCCGGCAC GATGCCCGCG TGGCCTCTGC GCGCGCCGAG
GCGGTCGAAC TGCAGGCGCA GATGGCATTG GAACGTGCCC GCCTGGCGGG CGAGCGCGAA
GCCGCTCGCG CGCGCACCGA CGCGGCGCGG GCGCAGCTGG CCGCTGCCGA TCGTCGCGCC
CAACTGGCGC GCGAATCGCG CGGCTTCTTC GACAAGTCCT TCCGCCTGGG CGAATCCGAC
CTGCCCACGC GCTTGCGCAT CGAGGCCGAG GCCGCCGACG CCGAGCGACA GGCCGTGCGC
GCCCGCATCG AACTCGCCGC AGCCATCTCG GCGTGGCGGC AGGCCCTGGG CCTGCTGCCG
CAGTGA
|
|---|
| Protein sequence | MHRRRIMPAG RWHHAARATL ATVASTALTA ALMGVAIEAR AQTPAAPSEP TPPTLRAAFE
TAWARQPEAQ ALAARRDAAR AQRDAAQAWT PEPVAMELST KTDRLNRNLG TREVEVGVAI
PLWLPGERGR SQALADAEGR AIESRTTAAQ LRVAAAVREA WWAWQRARVE LDAARGQLDN
VQRIAADVGK RLRAGDLARA DQHQADGAVA AAEAAVAQAE GALTAGWQQL RPLVAMPAAA
APSAAPGADA EPEPSTATGP ADGLDTHAEL LSLKDRSAVA DGVAALAATQ SRASPELTIA
ATRDRGTYGE SYQQTFTVGV RIPFGAGPRH DARVASARAE AVELQAQMAL ERARLAGERE
AARARTDAAR AQLAAADRRA QLARESRGFF DKSFRLGESD LPTRLRIEAE AADAERQAVR
ARIELAAAIS AWRQALGLLP Q
|
|---|
| |