Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_1202 |
Symbol | |
ID | 4672489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 1273004 |
End bp | 1273843 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639838324 |
Product | farnesyl-diphosphate farnesyltransferase |
Protein accession | YP_985510 |
Protein GI | 121593614 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0346934 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.446286 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTCCTG AACAGTACGT CCAGCAAAAG GCCGCCGCCT CCGGCAGCAG CTTCTACTAC GCTTTCCTCT TCCTGCCGCG CGAGCGGCGT ACGGCCATCA CGGCCTTCTA CGCCTTTTGC CGCGAGGTGG ACGACGTGGT GGACGAAGTC TCCGAAGCCA GCGTGGCCCA GGCCAAGCTG GCCTGGTGGC AGGGCGAGGT GGCCAAGGCC TTTGCCGGGC AACCCAGCCA CCCGGTGATG CAGGCGCTGA TGCCGCATGC GGCCGCCTAC GGCATCGAAC AGCGCCACCT GCTGGCCGTG ATCGAGGGCT GCCAGATGGA CCTGGAGCAG ACGCGCTACC TGGACTTCGC GGGTCTGGCG CGCTACTGCC ACCTGGTGGC CGGCGTGGTG GGCGAGGTGG CGGCGCGCAT CTTCGGCCAG CAAGATGAGC GCACCACGCA GTACGCGCAC AAGCTGGGCC TGGCGTTCCA ACTCACCAAC ATCATCCGCG ACGTGGGCGA GGACGCCATG CGCGGGCGCA TCTACCTGCC CATTTCTGAG CTGCAGCAGT TCGATGTGAA GGCGCACGAG ATCACCAAGC GCGAGTACTC CGAGCGCTTC ACCACGCTGA TGCGCTTTCA GGCCGAGCGC GCGCACCTCT TCTACGACCA GGCGCTGGCG CTGCTGCCCG ACGTGGATCG GCGCGCGCAG AAGCCCGGCC TGATGATGGC CAGCATCTAC CGCACGCTGC TGCGCGAGAT CGAGGCCGAC AACTTCCAGG TACTGCACCA GCGCACCAGC CTCACGCCGC TGCGCAAGTT CTGGCTGGCC TGGAAGGTGC AGGCGCTGGG GATGATGTGA
|
Protein sequence | MSPEQYVQQK AAASGSSFYY AFLFLPRERR TAITAFYAFC REVDDVVDEV SEASVAQAKL AWWQGEVAKA FAGQPSHPVM QALMPHAAAY GIEQRHLLAV IEGCQMDLEQ TRYLDFAGLA RYCHLVAGVV GEVAARIFGQ QDERTTQYAH KLGLAFQLTN IIRDVGEDAM RGRIYLPISE LQQFDVKAHE ITKREYSERF TTLMRFQAER AHLFYDQALA LLPDVDRRAQ KPGLMMASIY RTLLREIEAD NFQVLHQRTS LTPLRKFWLA WKVQALGMM
|
| |