| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1163 |
|---|
| Symbol | |
|---|
| ID | 4672186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 1228176 |
|---|
| End bp | 1229180 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639838280 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_985471 |
|---|
| Protein GI | 121593575 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGAGG CGTCCTGGCT GGAGGATGCT GATCCAGCAG AGACAGGTGG GAGTCAGGCG
GACGAGTTTG AGGCGGAACT GCGGGAGGTC GTCGTGGGCG CCGAGCAGCA TGCTCAGCGG
CTGGACAAGG CACTCGCGGA ACTGGTCCCA GAGTTTTCCC GCAGTTATCT GCAGCAGTTG
CTGCTCCAGG GCTGCGTACG CCTGAATGGG CGGGAGGTGC AGAAGCCTGC GTCCAGGGTC
AAGGTCGGGG ATCGCATCGC GGTCGAGATG CGCCCTACGC AGCAGAGCCA GGCTTTTCGG
CCCGAGCAAT GGCCATTGGA TGTGGTGTAT GAGGATGAGC ACATCCTCGT GATTCACAAG
CCTGCGGGGC TGGTGGTGCA TCCCGCGCCC GGCAATTGGA GCGGCACGTT GCTGAACGCC
TTGCTTGGCC GGGATGCGCA GGCGATGCAG GTGCCGCGTG CGGGCATCGT CCATCGACTG
GACAAGGACA CCAGTGGCCT CATGGTCGTT GCGCGCAGCC GGTCGGCCAT GGATGCACTC
GTCCGCATGA TCGCTGCGCG CGAGGTCAGC CGCCAGTATG TGGCGCTGGG GTGGGGCGGC
TGGACGGGGG CCGCACATCG ATCGGTGCAT GCCCCGATCG GTCGTGACCC GCGCAATCGC
CTGCGGATGG CGGTGGTCGA TCTAGCACAG CATCCAGGCA AGGAAGCCCG CACCGATTTC
GACCTGATAG ATGCCAACGA GGAGGTGTGC CTCGTGCGTT GCACGCTGCA CACGGGGCGA
ACGCACCAGA TCCGCGTGCA TATGGCATCC ATACGTCATC CCTTGGTGGC AGATGCACTG
TACGGCGGCG CGCTGGCCGG GCCTATGCAT CGACAGGCGC TGCATGCATT CCGGCTGGCG
TTTGTACACC CGGTCACTGG CGCTGCCCTG GAGTTCCACG CGCCGCTGCC GGAAGACATG
GCGCAGGCGC TGGATTTTTG GGGGCTGCGC TACAATCGTT CCTGA
|
|---|
| Protein sequence | MGEASWLEDA DPAETGGSQA DEFEAELREV VVGAEQHAQR LDKALAELVP EFSRSYLQQL
LLQGCVRLNG REVQKPASRV KVGDRIAVEM RPTQQSQAFR PEQWPLDVVY EDEHILVIHK
PAGLVVHPAP GNWSGTLLNA LLGRDAQAMQ VPRAGIVHRL DKDTSGLMVV ARSRSAMDAL
VRMIAAREVS RQYVALGWGG WTGAAHRSVH APIGRDPRNR LRMAVVDLAQ HPGKEARTDF
DLIDANEEVC LVRCTLHTGR THQIRVHMAS IRHPLVADAL YGGALAGPMH RQALHAFRLA
FVHPVTGAAL EFHAPLPEDM AQALDFWGLR YNRS
|
|---|
| |