| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1117 |
|---|
| Symbol | |
|---|
| ID | 4671223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 1174409 |
|---|
| End bp | 1175368 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639838235 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_985426 |
|---|
| Protein GI | 121593530 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
|---|
| TIGRFAM ID | [TIGR03212] putative urate catabolism protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.107227 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.334948 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTACG ACACGACGGC GCCCTACCCC CGCGACCTGA TCGGCTACGG CCGCACGCCC
CCGCATCCGC ACTGGCCGGG CAACGCCCGC GTGGCCGTGC AGTTCGTGCT GAACTATGAG
GAGGGCGGCG AGAACTGCGT GCTCCACGGC GACCCCGCCA GCGAGCAGTT CCTGTCCGAG
ATGTTCAACC CGGCCGCCTA CCCCGAGCGC CACATGAGCA TGGAGGGCAT CTACGAATAC
GGCGCGCGCG CCGGCGTGTG GCGCATCCTG CGCGAATTCG AAAGGCGCGG CCTGCCGCTC
ACGGTGTTCG GCGTGGCCAC CGCGCTGCAG CGCCACCGCG AGGTGGCCCA GGCCTTTGTC
GAACTGGGCC ACGAGGTGGC CTGCCACGGC CTGAAGTGGA TCCACTACCA GAACGTGCCC
GAGGAGGTGG AGCGCGCCCA CATGGCGCAG TGCCTGGAGA TCTTCGACAC GCTCTACGGC
CGGGACGGCG ACCACGGCCA GGGCTGGTAC ACCGGGCGCG ACAGCCCCCG CACCCACCGC
CTGGTGGCCG ACGACGGGCG CTTTGCCTAT GACAGCGACT ACTACGGCGA CGATCTGCCG
TTCTGGATGA AGATGGCCAA GAGCGACGGC AGCGCGCACC ACCAGCTCGT CGTGCCCTAT
ACCCTCGATT GCAACGACAT GCGCTTTGCG CTGCCGCAGG GCTACTCGCA CGCCGACCCA
TTCTTTCAGT ACATGAAGGA CACGTTCGAT GCGCTCTACG CCGAGGGCGA TCCGGCCGGC
GACAACGCGC CGAAGATGAT GAGCATCGGC ATGCACTGCC GCCTGCTCGG CCGTCCCGGC
CGCATCACGG CGCTGCAGCG CTTCCTGGAC CACATCCAGC ACCACGACCA GGTCTGGGTG
TGTCGCCGCA TCGACCTGGC GCGCCATTGG GCGCAGCGCT TTCCCGTACC CGCCATTTAA
|
|---|
| Protein sequence | MTYDTTAPYP RDLIGYGRTP PHPHWPGNAR VAVQFVLNYE EGGENCVLHG DPASEQFLSE
MFNPAAYPER HMSMEGIYEY GARAGVWRIL REFERRGLPL TVFGVATALQ RHREVAQAFV
ELGHEVACHG LKWIHYQNVP EEVERAHMAQ CLEIFDTLYG RDGDHGQGWY TGRDSPRTHR
LVADDGRFAY DSDYYGDDLP FWMKMAKSDG SAHHQLVVPY TLDCNDMRFA LPQGYSHADP
FFQYMKDTFD ALYAEGDPAG DNAPKMMSIG MHCRLLGRPG RITALQRFLD HIQHHDQVWV
CRRIDLARHW AQRFPVPAI
|
|---|
| |