| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1040 |
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| Symbol | |
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| ID | 4674457 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 1085191 |
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| End bp | 1087017 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639838160 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_985352 |
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| Protein GI | 121593456 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0428099 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTCA TCACAAGCAA TTACGCCCCC GTCATGTTCG GGAGCCTGAT CATCTTCCTG
CTGCTGGGCT TCCCCGTGGC GTTCAGCCTG GGCGCCTGCG GCCTGCTGTT CGGCTTCCTG
GGGATCGAGC TGGGGGTCTT TCCTTCGTCC GTGATGGCCT GGCTGCCGCA GCGCCTGATC
GGCATCATGG CCAACGACAC GCTGCTGGCG GTGCCCTTCT TCACGCTCAT GGGCCTGATC
ATGAAGCGCA GCGGCATGGC GGAGGACCTG CTCGACACGG TGGGCCAGGT GTTCGGCCCT
TTGCGCGGCG GCCTGGCGCT GGCGGTGGTT TTCGTGGGCG CGCTGCTGGC GGCCACCACC
GGTGTGGTGG CGGCCTCGGT GATCTCCATG GGCCTGATCT CGCTGCCCAT CATGCTGCGC
TACGGCTACG ACCGGCGGCT CGCCAGCGGT GTGATTGCCG CATCCGGCAC CCTGGCCCAG
ATCATTCCCC CATCACTGGT GCTGATCCTG ATGGCCGACC AGCTCGGCCG CAGCGTGGGC
GAGATGTACA AGGGCGCATT CGTGCCCGCC TTCATCCTCG TCGGCCTCTA CGTGCTGTGG
GTGGTCATCC TGGCCATCTT CAAGCCCCAG TCCGTACCCG CCCTGCCACC CGAGGCGCGC
ATCTACCGTG AAGACAATGG CAGCTCCGGC TATGCCTCGC TGGCCGTCGT GATGGGCATC
TCCACGGCAG CATCGATCTT CCTAGCCGCT CACATGGCCG ACGTGCATAC GTGGTGGACA
GGCACCGAAG TGCTGGACGT GCCGACCGAT GAGAAGGTCG TCACCGCCAT GTGCGGCGGC
ACCTTCATCG CGTTCGTCAT CGCGAGCATC AATCGCGTGC TCAAGCTGGG CATGCTCTCT
CGCCTGGCCG AGCGCGTGAC CTTCGTGCTG ATTCCGCCAC TGCTGCTGAT CTTCCTGGTG
CTGGGCACCA TCTTCCTGGG CATTGCCACA CCGACCGAAG GCGGCGCCAT GGGTGCCATG
GCGGCGCTGG TCATGGGCTT CGCGCGCCGG CGCCTGGACA TGCCCCTGCT CAAGCAGGCG
CTGGGCGCCA CTACGCGCCT GGCCAGCTTT GTGATGTTCA TCATGATCGG CGCCACCACG
TTCAGCCTGG TGTTCCAGGC GGCCGATGGC CCGAAGTGGG TGGAGCACCT GCTGGCCAGC
CTGCCCGGCG GACAGGTGGG CTTCCTGATC GTGGTGAACC TCATGATCTT CTTTCTGGCT
TTCTTCCTGG ACTACTTCGA GCTGTCCTTC ATCGTGGTGC CGCTGCTGGG ACCCGTCGCC
GACAAGATGG GCATCGATCT GATCTGGTTC GGCGTGCTGC TGGCGATGAA CATGCAGACC
TCGTTCATGC ACCCGCCTTT CGGCTTCGCG CTGTTCTTCC TGCGCTCGGT GGCCCCGGAC
AAGCCCTACA TCGACCGGGT GACGCACAAG GCCATCCAGC CCGTGACCAC CATGCAGATC
TACAAGGGCG CCATTCCCTT CGTTCTGATC CAGCTGATCA TGGTGAGCCT GCTCATCGCC
TTCCCGTCCA TCGTGACGGG CAGCCTGGAC AAAAAGGTGG AAGTGAACAT GGAAGCGGTG
GGCGCGCAAA TGATGGATGC GCTCCAGGAT GCGGAGAGCT ACGGGGCCCC AGGCAACGAC
CCGTTCGCAT CGCAGCCCGC TCCAGACGCC GAGCAGGCAC CGGCACCGGC ACCGGAGGGC
GAGTTGGCGC CCCCTGCCGA CGGCGGCTAC GGCTCGGACG ACCCAGCCAA GGCGCTGCAG
GACGCCATGG GCTCGGGCAG CAAGTAA
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| Protein sequence | MEFITSNYAP VMFGSLIIFL LLGFPVAFSL GACGLLFGFL GIELGVFPSS VMAWLPQRLI
GIMANDTLLA VPFFTLMGLI MKRSGMAEDL LDTVGQVFGP LRGGLALAVV FVGALLAATT
GVVAASVISM GLISLPIMLR YGYDRRLASG VIAASGTLAQ IIPPSLVLIL MADQLGRSVG
EMYKGAFVPA FILVGLYVLW VVILAIFKPQ SVPALPPEAR IYREDNGSSG YASLAVVMGI
STAASIFLAA HMADVHTWWT GTEVLDVPTD EKVVTAMCGG TFIAFVIASI NRVLKLGMLS
RLAERVTFVL IPPLLLIFLV LGTIFLGIAT PTEGGAMGAM AALVMGFARR RLDMPLLKQA
LGATTRLASF VMFIMIGATT FSLVFQAADG PKWVEHLLAS LPGGQVGFLI VVNLMIFFLA
FFLDYFELSF IVVPLLGPVA DKMGIDLIWF GVLLAMNMQT SFMHPPFGFA LFFLRSVAPD
KPYIDRVTHK AIQPVTTMQI YKGAIPFVLI QLIMVSLLIA FPSIVTGSLD KKVEVNMEAV
GAQMMDALQD AESYGAPGND PFASQPAPDA EQAPAPAPEG ELAPPADGGY GSDDPAKALQ
DAMGSGSK
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