| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_1038 |
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| Symbol | |
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| ID | 4670731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | + |
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| Start bp | 1081806 |
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| End bp | 1083695 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 639838158 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_985350 |
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| Protein GI | 121593454 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.151705 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATGA CAAACTATCC ACTGCTTGAG CGCGTGAACG ACCCCGCCGA CCTGCGCCGG
CTGCCCCGTG CCGAGCTCAA GACCCTGGCC CATGAGCTGC GCGCCTTTGT GCTGGAGAGC
GTGTCCAAGA CCGGCGGGCA CCTGTCGTCC AACCTGGGCA CGGTGGAACT GACCGTGGCG
CTGCATGCCG TGTTCGACAC GCCGCGCGAC CGGCTGGTGT GGGACGTGGG CCACCAGACC
TACCCGCACA AAATCCTGAC CGGGCGGCGC GACCGCATGC CCTCGCTGCG CCAGCTGGGC
GGCCTGTCGG GCTTTCCGCA GCGCGCCGAG AGCGAATACG ACACCTTCGG CACGGCGCAC
TCGTCCACCA GCATCTCCGC GGCGCTGGGC ATGGCGCTGG CGGCCAAGCA GCGCGGCGAC
GAGCGCCGCT GTGTAGCCAT CATCGGCGAC GGCGCCATGA CCGCCGGCAT GGCCTTCGAG
GCGCTGAATA ACGCCGGCGT GGCCGACGCC AACCTGCTGG TCATCCTGAA CGACAACGAC
ATGAGCATCA GCCCGCCCGT GGGTGCACTG AACCGCTACC TGGCGCAGCT CATGAGCGGA
CAGTTCTACG CCAAGGCACG CGACATGGGC AAGAGCGTGC TCAAGAACGC GCCGCCGCTG
CTGGAGCTGG CCAAGCGCCT GGAGCAGCAG GCCAAGGGCA TGGTGGTGCC GGCCACGCTG
TTCGAGAAGT TCGGCTTCAA CTACATCGGC CCCATTGACG GGCACGACCT GGACTCGCTG
ATTCCTACGC TGGAAAACAT CCGCGGTCTC AAGGGCCCGC AGTTCCTGCA CGTAGTCACC
AAGAAGGGCC AGGGCTACAA GCTGGCCGAG GCCGACCCCG TGGCCTACCA CGGCCCGGGC
AAGTTCGATC CGCGCGTGGG CCTGGTCAAG CCGGCCACGC CGCCCAAGCA GACCTTCACC
CAGGTGTTCG GACAGTGGCT GTGCGACATG GCGGACAAGG ACAAGCGCCT GGTGGGCATC
ACGCCTGCCA TGCGTGAAGG CTCGGGCATG GTCGAGTTCC ACCAGCGCTT TCCCGACCGC
TACTACGACG TGGGCATTGC CGAGCAGCAT GCCGTCACCT TTGCCGCAGG CATGGCCTGC
GAGGGCGTGA AGCCCGTGGT GGCGATCTAC TCCACCTTTT TGCAGCGTGC CTACGACCAG
CTGATCCACG ACGTGGCTTT GCAAAACCTG CCCGTGGTGT TTGCGCTGGA CCGCGCGGGG
CTGGTGGGGG CCGACGGCGC CACGCACGCG GGCGCCTACG ACATCGCCTT CGTGCGCTGC
ATCCCCCACA TGAGCATGGC CTGCCCGGCA GACGAGCGCG AATGCCGCCA ACTGCTCACC
ACCGCCTACG AGCAAGACCA CCCTGTGGCC GTGCGTTACC CGCGCGGCGC GGGCGTGGGC
GTGGCGCCGC TACCCGATCT GGAGGGGCTG CCCTTCGGCA AGGGCGAGGT GCGCCGCACG
GGGCAGCGAA TTGCCATCCT GGCTTTCGGC ACGCTGCTGT ATCCGGCGCT GCAGGCGGCC
CAGGCGCTGG ACGCCACGGT GGTGAACATG CGCTGGGCCA AGCCGCTGGA TACGCAGCTG
CTGCTTCAGG TGGCAGCGGA GCACGATGCG CTGGTCACCG TCGAGGAGGG CTGCATCATG
GGCGGCGCCG GCAGTGCCGT GGCCGAGGCG CTGGCGGCCG CCGGACTGCA GCGTCCGTTG
CTGCAGTTGG GCCTGCCGGA TGTGTTCATC GAGCATGGCG ACCCGGCCAA GCTGCTGGCC
CTGCAGGGGC TGGACGCCGC TGGCATGCAG CGCTCCATCA CCGAGCGCTT CGGCGCATTG
CCGGGCGCGC AGGCGCTGGC AGCGGCCTGA
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| Protein sequence | MSMTNYPLLE RVNDPADLRR LPRAELKTLA HELRAFVLES VSKTGGHLSS NLGTVELTVA
LHAVFDTPRD RLVWDVGHQT YPHKILTGRR DRMPSLRQLG GLSGFPQRAE SEYDTFGTAH
SSTSISAALG MALAAKQRGD ERRCVAIIGD GAMTAGMAFE ALNNAGVADA NLLVILNDND
MSISPPVGAL NRYLAQLMSG QFYAKARDMG KSVLKNAPPL LELAKRLEQQ AKGMVVPATL
FEKFGFNYIG PIDGHDLDSL IPTLENIRGL KGPQFLHVVT KKGQGYKLAE ADPVAYHGPG
KFDPRVGLVK PATPPKQTFT QVFGQWLCDM ADKDKRLVGI TPAMREGSGM VEFHQRFPDR
YYDVGIAEQH AVTFAAGMAC EGVKPVVAIY STFLQRAYDQ LIHDVALQNL PVVFALDRAG
LVGADGATHA GAYDIAFVRC IPHMSMACPA DERECRQLLT TAYEQDHPVA VRYPRGAGVG
VAPLPDLEGL PFGKGEVRRT GQRIAILAFG TLLYPALQAA QALDATVVNM RWAKPLDTQL
LLQVAAEHDA LVTVEEGCIM GGAGSAVAEA LAAAGLQRPL LQLGLPDVFI EHGDPAKLLA
LQGLDAAGMQ RSITERFGAL PGAQALAAA
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