| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0950 |
|---|
| Symbol | |
|---|
| ID | 4672558 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 992279 |
|---|
| End bp | 992839 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639838072 |
|---|
| Product | transcription elongation factor GreB |
|---|
| Protein accession | YP_985266 |
|---|
| Protein GI | 121593370 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0782] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01461] transcription elongation factor GreB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.380314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0000173092 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG CATTCACCAA GGAAACCGAT ACCGACGACG AACCGTCCCT CCCCCCGCAA
GCGCCCGTTG GGGCCGGCAA GAACTACATC ACACCCCAGG GATATGCGCG CCTTCGCCGC
GAGTTGCTGG ACCTTATCGA TGACGAGCGC CCCAAGGTGG TAGAAATTGT CCATTGGGCT
GCCAGCAACG GAGATCGCTC GGAGAACGGC GACTACCTGT ACGGCAAAAA AAGGCTGCGC
GAGATCGACA GGCGCATCCG TTTCCTGACG AAACGGCTGG AAATCGCGGA TGTCGTGGAC
CCATCGGTAC ACGCGGGCAG TGACCAAGTC TTCTTCGGCG CCACGGTCAC CTACGCCGAG
GAGGACGGCG TGGAGCGCAC GGTGACGATT CTGGGCATTG ACGAAGCCGA CAACAGCCTG
CAGCAGATCA GCTGGATTTC TCCCGTGGCG CGCGCGCTGC TCAAAGCCCG GGAGGGAGAC
GAAGTGACCC TGCAGACTCC CGCCGGCCTA CGTACCCTGG AAATCCTGCG TGTCGAATAC
CCCGTCGCGG CGCCTCGGTG A
|
|---|
| Protein sequence | MSKAFTKETD TDDEPSLPPQ APVGAGKNYI TPQGYARLRR ELLDLIDDER PKVVEIVHWA
ASNGDRSENG DYLYGKKRLR EIDRRIRFLT KRLEIADVVD PSVHAGSDQV FFGATVTYAE
EDGVERTVTI LGIDEADNSL QQISWISPVA RALLKAREGD EVTLQTPAGL RTLEILRVEY
PVAAPR
|
|---|
| |