| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0890 |
|---|
| Symbol | |
|---|
| ID | 4670803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 939975 |
|---|
| End bp | 940850 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639838013 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_985208 |
|---|
| Protein GI | 121593312 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.688141 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC TGCCGACCTT CCCCGCGCCC AGCCCCCACA CGCCGGCGTT CTGGCGCCGC
GCGCTGCGCC ACCCCAGCTG CGCGATCGGT GCCGTACTCA CGCTGGCGCT GGTGCTCTCC
GCCCTGCTCT CCTTCGTCTG GACGCCATGG CCGCCTTATG AGATGGCGAT GGATGCCGCC
CTGCAGCCCC CCGGCGCGCA GCACTGGCTG GGCACCGACG CCTACGGGCG CGACGTGGCC
TCGCAACTGC TCGTGGGCGC GCGCGCGTCC ATCGCGGTGG GCGTGATCGC CGTGGGCATC
GGCCTGGCGC TGGGCGCCGC GCTCGGGCTG CTGGCAGCGG CGCGCGGCGG CTGGGTGGAG
GAAGCCGTCA TGCGCCTGGC GGACTTCACC TTCGCGTTCC CCGCGCTGCT GCTGGCCATC
ATGCTCACGG CCGTGTTCGG CCCCGGCATG GTGAACGCCA TCATCGCCAT CGGCATCTTC
TACATACCGA CCTTTGCCCG CGTCACGCGC GCATCGGCCA AGGCGGTGTG GGCGCGTGAA
TACATCCTGG CGGCGCGCGC CTGCGGCAAA GGCCCATGGC GCATCACCTT CGAGCATGTG
CTGCCCAACA TCGCTTCCGT GCTCATCGTG CAGGCCACGA TCCAGTTCGC GCTGGCGATC
CTCGCCGAGG CCGCGCTTTC GTACCTGGGC CTGGGCACGC AGCCCCCGCA ACCGTCGTGG
GGACGCATGC TGGCCGAGGC CCAGACCCTC ATGTTCCAGG CGCCGCTGCT GGCCGTGTGG
CCGGGCGTGG CGATTGCGCT GGCGGTGCTG GGCCTGAACC TGCTGGGCGA CGGGCTGCGC
GATCTGCTGG ACCCCCGACT GTCCCGCCAG CGATGA
|
|---|
| Protein sequence | MSALPTFPAP SPHTPAFWRR ALRHPSCAIG AVLTLALVLS ALLSFVWTPW PPYEMAMDAA
LQPPGAQHWL GTDAYGRDVA SQLLVGARAS IAVGVIAVGI GLALGAALGL LAAARGGWVE
EAVMRLADFT FAFPALLLAI MLTAVFGPGM VNAIIAIGIF YIPTFARVTR ASAKAVWARE
YILAARACGK GPWRITFEHV LPNIASVLIV QATIQFALAI LAEAALSYLG LGTQPPQPSW
GRMLAEAQTL MFQAPLLAVW PGVAIALAVL GLNLLGDGLR DLLDPRLSRQ R
|
|---|
| |