Gene Ajs_0788 details

Gene Information

• Locus tag: Ajs_0788
• Symbol: mscL
• ID: 4672874
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax sp. JS42
• Kingdom: Bacteria
• Replicon accession: NC_008782
• Strand: -
• Start bp: 831963
• End bp: 832391
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 639837911
• Product: large-conductance mechanosensitive channel
• Protein accession: YP_985108
• Protein GI: 121593212
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.112062
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGGCATTG CCAAAGAGTT TCGGGAGTTT GCCGTTAAGG GCAACGTCAT TGACCTCGCG 
GTCGGCGTGA TCATCGGTGG TGCCTTCGGC AAGATCGTCG ACTCCGTCGT CAGCGACCTC 
ATCATGCCGG TCGTGGGCTT GGTGTTCGGC AAGCTGGACT TCTCCAACCT GTTCATCGTG 
CTGGGCAGCG TGCCGGAGGG CACGCCCTAT ACGCTGGAGG CGATTCGCAA AGCGGGCGTG 
CCGGTACTGG CTTACGGCAA TTTCATCACC GTCGCGGTCA ATTTCGTGAT CCTCGCGTTC 
ATCATCTTCG TGATGGTCAA ACAGATCAAC CGGCTCAAGC GTGAGACACC CGTCGAGCCG 
CCCGCCCCGC CCGCCACTCC CGAGGACATC CAGCTGCTGC GCGAGATCCG CGACAGCCTC 
AAGCGCTGA 

 

Protein sequence

MGIAKEFREF AVKGNVIDLA VGVIIGGAFG KIVDSVVSDL IMPVVGLVFG KLDFSNLFIV 
LGSVPEGTPY TLEAIRKAGV PVLAYGNFIT VAVNFVILAF IIFVMVKQIN RLKRETPVEP 
PAPPATPEDI QLLREIRDSL KR