| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0674 |
|---|
| Symbol | |
|---|
| ID | 4671753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 710864 |
|---|
| End bp | 711412 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639837798 |
|---|
| Product | general secretion pathway protein H |
|---|
| Protein accession | YP_984995 |
|---|
| Protein GI | 121593099 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0856392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.35732 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGGG TACACCCCAG CCCAGCGGAC GCCGCGCAGG GGCCTCGGCC GGCCGCGCCA
CTACGCCGCG CAGGCTTCTT CTCCCCCCGC TCCTTGCGCA GCAGGCGAGA CAGGCAAAGC
CGCGCAGCTG TCGCCCAGCG GGGTTTTACG ATCCTTGAAT TGCTGGTGGT CATTTCCATC
ATCGCCCTGG CGACCGCCGG CGTGGGCCTG GCACTGCGCG ACAGCGGCGC CACCCAACTG
CAGCGCGAAG GCGAGCGGCT GGCAGCGCTG CTGGAGTCGG CGCGCGCGCA ATCGCGCGCC
TCCGGCGCGG CGGTGCGCTG GCGTGCCGAT GCCCAGGGCT TTCGCTTCGA GGGCGTGCCG
CCCGACACAT TGCCCAACCG CTGGCTGGAC AGCGCCACCG GCGTGCAGGG CCCTGCGGAA
CTGTGGCTGG GGCCGGAACC CCTCATCGGC CCGCAACAGG TGGTGATCGT GAGCGGCGCG
CACCCCGACC GCGCGGTGCG CGTGGCCACC GACGGGCTGC GCCCGTTTGC CGTGCAGGCG
CTGCCATGA
|
|---|
| Protein sequence | MTRVHPSPAD AAQGPRPAAP LRRAGFFSPR SLRSRRDRQS RAAVAQRGFT ILELLVVISI
IALATAGVGL ALRDSGATQL QREGERLAAL LESARAQSRA SGAAVRWRAD AQGFRFEGVP
PDTLPNRWLD SATGVQGPAE LWLGPEPLIG PQQVVIVSGA HPDRAVRVAT DGLRPFAVQA
LP
|
|---|
| |