| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0667 |
|---|
| Symbol | |
|---|
| ID | 4672000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 703470 |
|---|
| End bp | 705815 |
|---|
| Gene Length | 2346 bp |
|---|
| Protein Length | 781 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639837791 |
|---|
| Product | general secretion pathway protein D |
|---|
| Protein accession | YP_984988 |
|---|
| Protein GI | 121593092 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.509623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACT TGCCCCGCCA TCCCCTGCGG TTCACTCTTC ATTTGATAGC TGCTAGCGCT
TTATTGACGG GCGTTAGCAG CCAAATTCAT GCACAAACCT CCGGGCAGCG CGCCGGCAGC
GTGCGGCCCA GCGAGCCGGT GACGCTGAAC TTTGCCAACG CCGACATCGA GGCCGTGGCG
CGCACCATGG CCACCATCAC CGGCAAGAAC GTGGTGGTGG ACCCGCGCGT GAAGGGCCAG
ATCACGCTGG TGACCGAGAA CGCGGTGCAG CCCAACGCGG CCTTCCAGCA GTTCCTGGCC
GCGCTGCGGC TGCAGGGCTT CACGGTGGTC GAGTCGGCGG GCCTGTACAA GGTCGTGCCC
GAGGCCGATG CCAAGCTGCA GACCGGCAAC GTGAGCGTGT CCCAGGGCGG CGCGGGCGGC
ACGCCCGCGG GCGGGCAGAT CGTCACGCAG ATCTTCAAGC TCAACTTCGA GAACGCGGCC
AACCTGGTGC CGGTGCTGCG CCCGCTGATC AGCCCCAACA ACACCATCAA CGTGAACCCC
GGCAACAACT CGCTGGTGAT CACCGACTAC GCCGACAACC TGCAGCGCCT GGCGCGCATC
GTGGCGGCCA TGGACGTCTC CAACGCCAGC GACGTGGAGG TGATCCCGCT GCAGCACGCC
ATCGCCACCG ACCTGGCGCC GCTGGTGTCG CGCCTGATCG AGGGCGGCAG CGCCACTGCC
ACAGGCACTG CGCAGGGCGT GGCCCAGGGG CAGACCGACA ATTCGTTCAA GACCACGCTG
CTGGCCGAGC CGCGCAGCAA TGCGCTGATC GTGCGCGCGG CCAACCCGGC GCGCGTGGCG
CTGGTGCGCT CACTGGTGGC CAAGCTGGAC CAGCCGGCCG CGCCGGGCAG CTCCGCTGCC
AGCGGCAACA TCCACGTGGT GTACCTGAAG AACGCCGACG CCGTGAAGCT GGCCACCACC
CTGCGCGCAG CGCTGGGCAG CGCGGGGGGC AGCGGCACCA GCAGCAGCGG CGGCACGGGA
ACCGGCAACC TGTCGGGCGG CCTCACGCGG ACCGGCGCAT CGGGCCTGGG CCAGACCAGC
GGCCTGGGCA ACAGCACCAA TGCCAGCGGC AATGCCGGGG GCCTGGGCAG TTCGGGCCTG
GGAACGGGCC AGGGCAGCAG TGGCAGCAGC GATGCCAACC AGCCGTCCAC CGGCGGCATC
ATCCAGGCCG ACCCGACGAC CAACTCGCTC ATCATCAGCG CGCCGGAGCC GCTGTACCGC
CAGATCCGCG CCGTGATCGA CAAGCTGGAC GGCCGCCGCG CGCAGGTACT CATCGAGAGC
CTGATCGTGG AGGTGAGCGC CAGCAAGGTG GCCGAGTTCG GCATCCAGTG GCAGGGCGTG
CTGGGCAATT ACGGCAGCAC GCTGGGCGTG CTGGGCAACA ACTCCAGCGT GGCCGGACGC
AACATCCTGG ATCTGGCGCT GGCGGCAGCC ACCGGCAACG TGACCTCCAT CGCCAATGCC
AAGCCGGCCG CCGGCATGAA CCTGGCCGTC GCGCCGCGCA TCAACGGCAA GTACTACCTG
GGGGCGCTGG CCAACTTCCT GGAAAACACG GGCGACGCCA ACGTGCTGTC CACCCCCAAC
CTGCTCACGC TGGACAACGA GGAGGCGCAG ATCATCATCG GCAACAACGT GCCGTTCGTG
ACGGGCTCCT ACGCCAACAC CGGCGGCAGC GGCGGCGCGG TCAACCCGTT CACCACCGTG
GAGCGCAAGG ACGTGGGCCT GATGCTGCGC GTGCGCCCAC AGATCAACGA GAACGGCACC
GTCAAGCTCA CGATGTACCA GGAGGTCTCC AAGGTCGCGG AGAGCACGCT GTCCAATGCC
AACGGCCCCT CCACGAGCAA GCGCTCCATC GAGTCCACGG TGCTGGTGGA TGACGGCAGC
GTGATCGTGA TCGGCGGTCT GCTGGAAGAC AACTATGCGC TGGGCCAGGA CAAGGTGCCG
GTGATGGGCG ACCTGCCCGT GGTGGGCGGA CTGTTCCGCA ATGAAAAGCG CACGCGCCAG
AAGACCAACC TGATGGTCTT CCTGCGCCCC ATGGTGATCC GCGACAGCGC CACCAGCGAC
GCACTGATGG TGGACCGCTA CGAGGCCATC CGCGCGCTGC AGCAAAGCAC GCAGCCCGCG
CCCAGCACGA TGATGAGCGG TGTGTCCGAG GCGCCGGTGC TGCCGCCCCT GCCCGCCCCC
GCCTCTCCCG CCGCGCCCGT GCAGCCCCCG GCCACACCTG CGCCGCTGGC GCCGCTCGCA
CCCCAGCCGC CCGCGCGCAC CGCCACGCCG CCCAGCATGG GCCAGTCGCC CTACAGCCCG
CAGTAA
|
|---|
| Protein sequence | MTNLPRHPLR FTLHLIAASA LLTGVSSQIH AQTSGQRAGS VRPSEPVTLN FANADIEAVA
RTMATITGKN VVVDPRVKGQ ITLVTENAVQ PNAAFQQFLA ALRLQGFTVV ESAGLYKVVP
EADAKLQTGN VSVSQGGAGG TPAGGQIVTQ IFKLNFENAA NLVPVLRPLI SPNNTINVNP
GNNSLVITDY ADNLQRLARI VAAMDVSNAS DVEVIPLQHA IATDLAPLVS RLIEGGSATA
TGTAQGVAQG QTDNSFKTTL LAEPRSNALI VRAANPARVA LVRSLVAKLD QPAAPGSSAA
SGNIHVVYLK NADAVKLATT LRAALGSAGG SGTSSSGGTG TGNLSGGLTR TGASGLGQTS
GLGNSTNASG NAGGLGSSGL GTGQGSSGSS DANQPSTGGI IQADPTTNSL IISAPEPLYR
QIRAVIDKLD GRRAQVLIES LIVEVSASKV AEFGIQWQGV LGNYGSTLGV LGNNSSVAGR
NILDLALAAA TGNVTSIANA KPAAGMNLAV APRINGKYYL GALANFLENT GDANVLSTPN
LLTLDNEEAQ IIIGNNVPFV TGSYANTGGS GGAVNPFTTV ERKDVGLMLR VRPQINENGT
VKLTMYQEVS KVAESTLSNA NGPSTSKRSI ESTVLVDDGS VIVIGGLLED NYALGQDKVP
VMGDLPVVGG LFRNEKRTRQ KTNLMVFLRP MVIRDSATSD ALMVDRYEAI RALQQSTQPA
PSTMMSGVSE APVLPPLPAP ASPAAPVQPP ATPAPLAPLA PQPPARTATP PSMGQSPYSP
Q
|
|---|
| |