Gene Ajs_0540 details

Gene Information

• Locus tag: Ajs_0540
• ID: 4673132
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidovorax sp. JS42
• Kingdom: Bacteria
• Replicon accession: NC_008782
• Strand: +
• Start bp: 561512
• End bp: 562060
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 639837669
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: YP_984866
• Protein GI: 121592970
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.440545
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.116329
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCAAGCTA CCCGCCTCGC CATTCCTGAT GTCGTGCTGA TCGAGCCTAA AGTGTTCGGC 
GACGCACGCG GATTTTTTTT CGAGAGCTTC AACCAGCGCG CCTTCAACGA GGTCACGGGT 
ACCAACCATC ATTTTGTGCA AGACAATCAC AGCCGCAGCA CGAAAGGGGT GCTGCGTGGC 
CTGCATTATC AAATTCAACA ACCCCAAGGC AAGCTGGTGC GCGTGGTGCA GGGGGCGGTG 
TTCGACGTTG CCGTGGACAT TCGAAAATCT TCTGCGACAT TCGGCCAATG GGTCGGTGTC 
GAGTTGAGTG CCGAGAACCA CCGCCAGCTC TGGGTGCCGC CCGGTTTTGC CCACGGTTTC 
GTGGTGCTCA GTGATACGGC CGACTTCTTG TACAAAACCA CCGATTACTA TGCGCCCCAG 
TACGAGCGCT GCATCGCGTG GAACGATCCA ACATTGGCCA TCGCTTGGCC TGATCTGGGA 
ATGCGTCCCA CATTGTCCGC AAAGGACGGT GCGGGCAAAC TGCTGCAGCA GGCAGAGTTG 
CCCGCGTGA 

 

Protein sequence

MQATRLAIPD VVLIEPKVFG DARGFFFESF NQRAFNEVTG TNHHFVQDNH SRSTKGVLRG 
LHYQIQQPQG KLVRVVQGAV FDVAVDIRKS SATFGQWVGV ELSAENHRQL WVPPGFAHGF 
VVLSDTADFL YKTTDYYAPQ YERCIAWNDP TLAIAWPDLG MRPTLSAKDG AGKLLQQAEL 
PA