| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0488 |
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| Symbol | |
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| ID | 4672311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 508222 |
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| End bp | 511758 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639837618 |
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| Product | CRISPR-associated helicase Cas3 family protein |
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| Protein accession | YP_984815 |
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| Protein GI | 121592919 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02562] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.114038 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTGC TCTTCGTCGC GCAATGCACC AAGCGTGCAT TGACGGAAAC CCGCCGCATC
CTCGATCAGT TTGCGGAGCG GCGCGGCGAG CGTACCTGGC AAACGCCCAT CACCCAAGCC
GGGCTGGACA CCGTGCGCAA GCTGCTGCGC CAGACCGCAC GCAAGAACAC CGCAGTGGCC
TGCCATTGGA TTCGTGGGCG TGACCACAGC GAGTTGCTAT GGGTGGTGGG CGACGCCAGC
CAATTCAACG ACCAGGGTGC GGTGCCCACC AACACCACGG CCAGCAGCGT GCTGCGCGCG
GGCGACGAAA ACGCCTGGCA CCATTTGCCG CTGATGACCG CCCTGGCTGC ACTGGCGGCC
CTGCTGCACG ACCTGGGCAA GGCCACGCAG GCCTTCCAAG ATCGGCTCCA AAACCCCGGC
CTGCGCGAGC GCAACCACTA CCGGCATGAA TGGGTGTCGG TGCGGCTGTT CCAGGCCTTC
GTGGGCCAGG ACGATGACGC CGGCTGGCTG CAACGGCTGG CGGCCTATGC CGACGCAGAC
ACCGATGCGC AGGCACTGGA GGCAGCGTGG CTGGACCATG CGGGCGGGCG GCTGTTGCGC
GATGGGCTGG ACGAGCCCCA GGCCAAGCAA CATTTGCCAT TTGCCCGCCT TCCGCTGCTG
GCCCAGGCGG TGGCGTGGCT GGTGTTCAGT CACCATCGAC TGCCCTGCCT GCCTGTGGAG
CAGGCACAAG GCGTGGACGC AGAGGACATG GAAGACGGCA GGCGCACATA CCGCCGTTTC
GGTGCGCGCC CCGGCTTCAT CAACACCGGC GATTTGGACG ACGTGCTGCT GCGCATCAAC
GCCGACTGGA ACGAGCCACG TGAGAGCGCT GCGCCCTCCA CGGTGCAAGC CCACTGGCAC
TTCCCGCACG GGCTACCCGT CACCCAACCG GCCTGGCGCA AACAGGCCGC CCGCTACGCC
CGCAAACTGC TGGAGCTGTC GCAAATCGCC GGACAAGGCG CGGTGCTGCA CGACCCCTTT
GCAATGCACG TTGCGCGCCT GTGTCTCATG CTGGCAGACC ACCATTACTC CAGCCTCACC
GACGCAGCCC CACGCGCCCC GTACCTCAGC CCCGGCTACC CGCTCTACGC CAACACCCGC
AGCAATCACT ATCAAAACAA TAGCTGCTCA CGCTTGATGG ATAAGCGCCA GAGCCCAATT
TTCAATCAGA CGTTGGACGA ACATCTGCTG GGCGTGCAGG CCCATGCCAC GCTGGTGGCA
CGCTCCCTGC CCAGCCTCAC GCGCAGCCTG CCGGCGCTCA AGAACCATAA GCCCCTCAAA
AAGCGCAGCG CCGACCCGCG CTTTGCCTGG CAAGACAAGG CCGCCGACCT GGCCGCCAGC
GTGCGCGCCC GCGCAGCGCA TCAAGGGGCG TTCATCGTCA ACATGGCCTC CACCGGTTGC
GGCAAAACAC TGGGCAATGC CCGCATCATG AACGCGCTGG CCGACCCCGC CACCGGCCTG
CGTTGCGCCT TTGCCATGGG GCTGCGCACG CTCACGCTGC AAACCGGGCG CGTGTTCCAG
AACGACCTGC AACTGAGCGA CGAGCAACTG GCCATTCAGG TCGGCGGTGC AGCCAGCCGG
GCGCTGTTTG AATACTGGGA GCAGCAGGCC GAGGCCACCG GCTCGGCATC CAGTCAGGCG
CTGCTGGACG AAGCGGGCAC CGTGCTCTAC GAGGGCAACG ACCAGCACCC GCTGCTGCAG
CGCCTGACCG ACGACGCCCA AGCCCGTACG CTGATTGCCG CGCCCCTGCT GGTGTGCACC
GTAGACCACC TTACCCCCGC CACCGAAAGC CTGCGCGGTG GCCGCCAGAT TGCGCCCATG
CTGCGCCTGC TGACCAGCGA CCTGGTGCTG GACGAGCCCG ACGACTTTGA CATGGCCGAC
CTGCCCGCTC TCACCCGTCT GGTGCACTGG GCGGGCCTGC TGGGCAGCCG CGTGCTGCTG
TCATCGGCCA CACTGCCGCC CGCGCTGGTG GAAGGGCTGT TCCTGGCCTA CCGTGCCGGG
CGCGCCGTGT ACCAGCGCCA CCGCAGCGAA CGGCCCAGCG AGCCTGTGAA CATCTGCTGC
CTGTGGGTCG ACGAATTCCG CCAGACCACC CAGGACTGCG CGGACGGGTC CGCCTTCCGC
GAAGCGCACA CCCAGTACGT GCAAAAGCGC GTTACCAAGC TGCAGCAGGC CGAGGTGCGG
CGACTGGCGC AGATTGCGCC CCTGCCCGAC ACCTGGCACG GCATGCAGGA AGCCGAGCGC
CGCAAAGACT TTGCCCGCCT GATGCTGGAA CAGGCTTGGC AACTGCACCA GCAGCCCCAC
AACCACAGCA CGGATGCCGA CGCCGACGAC CACACCGCCA GCGGCAAACG CGTGAGCCTG
GGTCTCATCC GCATGGCCAA CATTGCCCCG CTGTACGACG TGGCGCTGGC CATGTACGCG
CCAGACGCAC TACCACCTGC GCTGCAAGGC CTGGTCCGCA TTCACCTGTG CGTGTACCAC
TCGCAGTTCC CTCTGCTGCT GCGCTCGGCC ATTGAGCAGC AGCTGGACAC CTTGCTCAAC
CGCCGGGGTG CCAAAGACGG GCACGACCCC GCGCTACACC GCCCCGACCT GCGCGCCCTC
ATCGACGCCC ACCCCGAGCC CCACCACCTG TTCATCGTGC TGGGCAGCCC CGTGACCGAA
GTGGGCCGCG ACCACGACTA CGACTGGGCC GTGGTCGAGC CCTCGTCCAT GCGCTCGCTC
ATCCAGCTGG CCGGGCGCGT GCGGCGGCAC CGGCCTGGGG CCATAGGCGG GGTGAACATG
GTGGTGTTGG ACAGCAACTT ACGGCATTAC AAAAAGCCAG GCCAGCCTGC GTATGAAAAG
CCGGGGTTCG AGACAGCGCA CGCGCCGTTC CAGCTCAAGT CTCACTATTT GCACGACCTG
CTGGCACGCG AGATGTGCCA AACCACCGCA TGGGCGGTAG ACGCACAACC GCGCATTGCC
CTGCCAGCCG ACAAGCTTCT GCCCAGCCGC CGCTGGACCG ACCTGGAGCA CGCCCGCATG
CACGACAGCC TGCTGCCCAA GCCCCAAGGC ACCGCAACGC CCACGCGTGC GGCCTGCCTG
CAATGGCACG AACCCCAGCC CGACACGCCC CGATCCCTGT GGCTTACCGG CCTGTTGCCG
CAGTTCCAGC GGTTCCGCCA GGACGATCAA AAACGCGATG ACGTAGCCCT GCTGCCAGAC
GAAGAGGAAG AAACGCTACA ACTACACCGC GTGCAAGACG GGGAGCGGCG CTACGACAAG
CTGTACGTAC CCATCCACCA AAGCCTGTGC CACCCGGTGC CCGCAGCGCA ACTGGTATCA
CCCAGCGTAT CGCCCTGGCC GCAGTTGGGC TTGATGGAGG AACTGGCTGC ACTGGCACAG
GCTCGGGGCT TGTCGCTGGA GCAATGTGCA GAACGCTATG CCACCGCCAG CCTGCCTGAA
TCGCAGGCTG GCTGGCGGTG GCACGAACAA CTGGGTTTCA ATCGAAAGGA GGGCTAG
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| Protein sequence | MNVLFVAQCT KRALTETRRI LDQFAERRGE RTWQTPITQA GLDTVRKLLR QTARKNTAVA
CHWIRGRDHS ELLWVVGDAS QFNDQGAVPT NTTASSVLRA GDENAWHHLP LMTALAALAA
LLHDLGKATQ AFQDRLQNPG LRERNHYRHE WVSVRLFQAF VGQDDDAGWL QRLAAYADAD
TDAQALEAAW LDHAGGRLLR DGLDEPQAKQ HLPFARLPLL AQAVAWLVFS HHRLPCLPVE
QAQGVDAEDM EDGRRTYRRF GARPGFINTG DLDDVLLRIN ADWNEPRESA APSTVQAHWH
FPHGLPVTQP AWRKQAARYA RKLLELSQIA GQGAVLHDPF AMHVARLCLM LADHHYSSLT
DAAPRAPYLS PGYPLYANTR SNHYQNNSCS RLMDKRQSPI FNQTLDEHLL GVQAHATLVA
RSLPSLTRSL PALKNHKPLK KRSADPRFAW QDKAADLAAS VRARAAHQGA FIVNMASTGC
GKTLGNARIM NALADPATGL RCAFAMGLRT LTLQTGRVFQ NDLQLSDEQL AIQVGGAASR
ALFEYWEQQA EATGSASSQA LLDEAGTVLY EGNDQHPLLQ RLTDDAQART LIAAPLLVCT
VDHLTPATES LRGGRQIAPM LRLLTSDLVL DEPDDFDMAD LPALTRLVHW AGLLGSRVLL
SSATLPPALV EGLFLAYRAG RAVYQRHRSE RPSEPVNICC LWVDEFRQTT QDCADGSAFR
EAHTQYVQKR VTKLQQAEVR RLAQIAPLPD TWHGMQEAER RKDFARLMLE QAWQLHQQPH
NHSTDADADD HTASGKRVSL GLIRMANIAP LYDVALAMYA PDALPPALQG LVRIHLCVYH
SQFPLLLRSA IEQQLDTLLN RRGAKDGHDP ALHRPDLRAL IDAHPEPHHL FIVLGSPVTE
VGRDHDYDWA VVEPSSMRSL IQLAGRVRRH RPGAIGGVNM VVLDSNLRHY KKPGQPAYEK
PGFETAHAPF QLKSHYLHDL LAREMCQTTA WAVDAQPRIA LPADKLLPSR RWTDLEHARM
HDSLLPKPQG TATPTRAACL QWHEPQPDTP RSLWLTGLLP QFQRFRQDDQ KRDDVALLPD
EEEETLQLHR VQDGERRYDK LYVPIHQSLC HPVPAAQLVS PSVSPWPQLG LMEELAALAQ
ARGLSLEQCA ERYATASLPE SQAGWRWHEQ LGFNRKEG
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