| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0420 |
|---|
| Symbol | |
|---|
| ID | 4671146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 426143 |
|---|
| End bp | 427186 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639837551 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_984748 |
|---|
| Protein GI | 121592852 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACATCA CCCAATTGCT CGCCTTCAGC GTGAAGAACA AGGCGTCCGA CCTGCACCTT
TCCGCCGGCC TGCCGCCCAT GATCCGGGTC CACGGGGACG TACGCCGCAT CAACGTCGAT
GCACTGGACC ACAAGACCGT CCACGCCATG GTGTACGACA TTATGAGCGA CGCCCAGCGC
AAGACCTACG AAGAGTTCCT GGAAGTGGAC TTTTCCTTCG AGATCGACGG CCTGGCGCGC
TTTCGCGTCA ACGCGTTCAA CCAGAACCGC GGCGCGGCCG CGGTGTTCCG TACCATTCCG
AGCAAGATCC TGACGCTGGA GCAGCTCAAC GCGCCCAAGA TTTTTGCCGA CCTGGCGCTC
AAGCCGCGCG GCCTGGTGCT GGTGACGGGC CCCACAGGTT CGGGCAAGTC CACCACCCTG
GCGGCCATGG TCAACTACCT CAACGAAAGC GAGTACGGCC ACATCCTCAC GGTGGAAGAC
CCGATCGAGT TCGTGCACGA GTCCAAGAAG TGCCTGATCA ACCAGCGTGA AGTCGGCCCG
ATGACACTGT CGTTCGCGGC CGCGCTGAAG TCCGCTTTGC GCGAAGACCC GGACGCCATC
CTGGTGGGCG AAATGCGCGA CCTGGAAACC ATCCGCCTGG CCATGACCGC CGCCGAAACG
GGCCACCTGG TGTTCGGCAC GCTGCACACG TCCAGCGCCG CCAAGACCAT CGACCGGATC
ATCGACGTCT TCCCCGCCGA GGAAAAGGAA ATGGTGCGCG CGATGTTGTC GGAGTCGCTG
CAGGCCGTGA TCTCGCAGAC GCTGTGCAAG ACCAAGGACG GTTCTGGCCG CGTGGCGGCG
CACGAGATCA TGCTGGGCAC GAGCGCCATC CGCAACCTGA TCCGCGAGGC CAAGGTGGCG
CAGATGTACT CCACCATCCA GACCAGCAAC AGCGTGGGCA TGCAGACGCT GGACCAGAAC
CTCTCTGACC TGGTGCGCCG CAACATCATC AGCCCGGCCG AGGCGCGCAG CAAGGCCAAG
ATTCCCGAGA ACTTCCCCGG CTGA
|
|---|
| Protein sequence | MDITQLLAFS VKNKASDLHL SAGLPPMIRV HGDVRRINVD ALDHKTVHAM VYDIMSDAQR
KTYEEFLEVD FSFEIDGLAR FRVNAFNQNR GAAAVFRTIP SKILTLEQLN APKIFADLAL
KPRGLVLVTG PTGSGKSTTL AAMVNYLNES EYGHILTVED PIEFVHESKK CLINQREVGP
MTLSFAAALK SALREDPDAI LVGEMRDLET IRLAMTAAET GHLVFGTLHT SSAAKTIDRI
IDVFPAEEKE MVRAMLSESL QAVISQTLCK TKDGSGRVAA HEIMLGTSAI RNLIREAKVA
QMYSTIQTSN SVGMQTLDQN LSDLVRRNII SPAEARSKAK IPENFPG
|
|---|
| |