| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0330 |
|---|
| Symbol | |
|---|
| ID | 4674011 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 342477 |
|---|
| End bp | 343154 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 639837461 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_984659 |
|---|
| Protein GI | 121592763 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.438813 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTTG AAGCCATTTT GTTTGACTGC GACGGCGTGC TGGTGGACAG CGAGCCCATC
ACCAACGGCG TGCTGTGCCA GATGCTGGGA GAAGCCGGCT GGCAACTGTC GCCCGACGAG
TGCATGCGCC TGTTTATCGG CAAAACCGTG CGCAGCGAAA CCGCCCGCAT CGAAGCCGAA
ACCGGCCGCC CGCTGACCGA CGCCTGGATG GCCGAGTTCT ACGCCCGCCG CAACGCCCGC
CTGCAGACCG AACTGGTCGC CATTGCCAAC GCCCCCCAGG CCGTGCATGC GGTGCATGCG
CTGCTGCAGG GGCGCATTGC CTGCGCATCG GGCGCCGACC GCTTCAAGGT CGAGATGCAG
CTGACCCAGG TGGGCCTGGC GCCGTACTTT GCCGGCCGCA TCTTCAGCGG CCACGAAATG
CCCGCCACCA AGCCCGCGCC CGACGTGTAC CTGGCAGCCG CCGCATCGGT CGCCGTGCCG
CCCGCGCGCT GCCTGGTGGT GGAAGACACG GTCACGGGCG TCATGGCCGG GGTGGCAGCG
GGCGCCACCG TCGTGGGCTA CAGCCCGTCG CCCGTGGGCC ACGGCTCGCC CGATGCCCTG
CGCGCCGCCG GCGCCCTGCA GGTGATGACC GATATGGCCG AGCTGCCTGT GCTGCTGCAG
GCGCTGCGGG GGTTGTGA
|
|---|
| Protein sequence | MTFEAILFDC DGVLVDSEPI TNGVLCQMLG EAGWQLSPDE CMRLFIGKTV RSETARIEAE
TGRPLTDAWM AEFYARRNAR LQTELVAIAN APQAVHAVHA LLQGRIACAS GADRFKVEMQ
LTQVGLAPYF AGRIFSGHEM PATKPAPDVY LAAAASVAVP PARCLVVEDT VTGVMAGVAA
GATVVGYSPS PVGHGSPDAL RAAGALQVMT DMAELPVLLQ ALRGL
|
|---|
| |