| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0328 |
|---|
| Symbol | |
|---|
| ID | 4673830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 337825 |
|---|
| End bp | 340977 |
|---|
| Gene Length | 3153 bp |
|---|
| Protein Length | 1050 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639837459 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_984657 |
|---|
| Protein GI | 121592761 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.218966 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGT TTTTTATCAA CCGCCCCATT TTTGCGTGGG TGATCGCCAT CGTGATCATG
TTGCTGGGGG TGCTGGCCAT CAAGGGCCTG GCCATCAGCC AGTATCCGAA CGTGGCGCCG
CCTGCGATCT CGATTTCGGT GACCTACCCC GGCGCATCGG CGCAGACCGT GCAGGACACG
GTGGTGCAGG TGATCGAGCA GCAGCTCAAC GGCCTGGATG GCCTGCGCTA CATCACCTCG
GCATCCGAGT CAGACGGCTC CATGCAGATC GTCGTGACCT TCGAGCAGGG CACCGACCCC
GACATTGCCC AGGTGCAGGT GCAAAACAAG CTGAACCTGG CCACGCCCAT GCTGCCGCAG
GAAGTGCAGC AGCAGGGCAT TCGCGTGGCC AAGTACCAGA TGAACTTCAT GATGGTCGTG
GGCCTGGTGT CCGAAGACGG GCGCATGAAC TCCAAAGACC TGGCGGACTA CATTGCCTCC
AACATCCAGG ATCCGGTCTC GCGCACCAAA GGGGTGGGCG ACTTCACGCT GTTCGGCGCG
CCCTACGCCA TGCGCATCTG GCTGGACCCT GCCAAGCTCA ACGCACACCA GCTCACGCCC
ACCGACGTGA TTGCGGCCGT GCAAAGCCAG AACGTGCAGA TTTCTGCCGG CCAGCTGGGC
GGCTTGCCCA CCATCAACGA CAAGGTGCAG CTGCAGGCCA CGGTACTGGG CAAGACCCGC
ATGAAGACGG CGGACGAGTT CCGCGAAATC ATGCTCAAGG TGCGGCCCAA CGGCGCGCAA
GTGCGCCTGA AAGACGTGGC TGACGTGCAG CTGGGCGGGC AGTTTTCCAG CATCTCGGGC
AAGTTTGATG GCAAGCCCGC CTCGGGCCTG GCGCTGCGCC TGGCCACCGG CGGCAACGTG
CTCGAATCCA TCGCCGCCGT GCGCGACACC ATTGCCCAGC TGGAGCCCAA CTTCCCGCAG
GGCGTGAAGG TGGTCTATCC GTATGACACG TCGCCAGTGG TGCAGGTATC GATCGACTCG
GTGATCACGA CGCTGCTGGA GGCCGTCGTT CTGGTGTTCC TGGTGATGCT GCTGTTTCTG
CAAAGCGTGC GCGCCACCAT CATTCCCACG CTGGCGGTGC CGGTGGTGCT GCTGGGCACC
TTCGGTATCT TGCTGGCGGC GGGCTTCACC ATCAATTTGC TGACCATGTT TGCCATGGTG
CTGGCCATTG GCCTGCTGGT GGACGACGCG ATCGTGGTGG TCGAAAACGT CGAGCGCCTG
ATGCACGACG AGCACCTGTC GCCCAAAGAG GCCACGATCA AATCCATGGG GCAGATCTCT
GGCGCGCTGG TGGGTATCGG CGTGGTGATC TCGGCGGTGT TCGTGCCCAT GGCCTTCATG
GACGGCTCCA CCGGCGTGAT CTACCGCCAG TTCGCCATCA CCATTGCGGC GGCCATGTCG
CTGTCGGTGC TGGTGGCCCT GATCTTCACG CCCGCGCTGT GCGCCACCAT CCTCAAGGCG
CCCGTGCCGG GCAAAAAGCC CGCCCGGTTC TTTGCCTGGT TCAACCGCGT GTTCAACGCC
AGCGCCAGCG GCTACGCCGT GGGCGTGGAG GGCATCCTCA AGCGCAACAA GGGGTTCTTG
CTGATCTATG TGCTGCTGCT GGCGGGGCTG GTGGCGCTGT TTGCCCGCAT TCCCACGGCG
TTCCTGCCTG ACGAAGACCA GGGCACGCTG ATGGTGCAGG TGCAACTGCC CTCCAACGCC
TCGGCGGCCC GCACCGACAA GGTGCTGCAG GCCGTCAGCC AGCATTTGCT GGACAACGAA
AAAGACACCG TGCAAAGCGT CATGGCGGTC AACGGCTTCA ACTTTGCCGG GCGCGGCCAG
AACAATGGCC TGCTGTTCGT CGAGCTGAAA CCCTTTGACG AGCGCAAGGG CGCGCACCAG
CACCTCAAGG CGCTGTACGG CCGCACCTGG GGCTTTGTCA GCCAGCTCAA CGACGCCATG
ATCATCCCGA TCATGCCGCC GGCCATCATC GAGCTGGGCA ACGCCACCGG CTACGACTTC
TTCCTGCAAG ACAACGGCGG CGTGGGCCAT GAGGTGCTGA TGCAGGCGCG CAACCAGATG
CTGGGCATGG CGGCGCAGTC GCCCAAGCTG GCCCTGGTGC GCCCCAACGG CCTGTCGGAC
GAACCCCAGT ACCAGATCGA AATTGACGAG GAAAAGGCGC GCGCGCTCAA CCTCAATCTG
GCGGACATCA ACGCCACCAT GTCGATTGCC TGGGGCTCGG CCTACATCAA CGACTTTATC
GACCGCGGCC GGGTGAAAAA GGTGTTTTTG CAAGGCAAGG CCGACGCCCG CGTGGGCCCG
GAAGACTTTT CCAAATGGTA TGTGCGCAAC AACCTCGGCA AGATGGTGCC CTTCAGCGCC
TTTGCCACCG GCAAATGGGT CTACGGCCCC GCCAAGCTGG AGCGCTACAA CGGCGTGCCC
GCTGTGCAGA TTGTGGGCAG CACCGCCCCT GGCGTGAGCA CCGGCGAAGC CATGGCCATC
CTGCAAGACA TGGCCAAGCA ACTGCCCCCG GGCGTGGACC TGGTGTGGAC CGGCCTGTCG
TACGAGGAAA TCAAGGCCGG CGACCAAAGC GCGTGGATCA TGGCCTTGTC CATGCTGGTG
GTCTTTTTGT GCCTGGCCGC CTTGTACGAG AGCTGGTCCA TCCCGTTCTC GGTGATGCTG
GTCGTGCCCC TGGGCATTTT GGGCGCGGTG CTGGCCACGC TGGGCCGTGG GTTGACCAAC
GACGTGTTCT TCCAGATTGG CATGATCACC ACCATGGGCC TGGCGGCCAA GAACGCCATC
CTGATCGTGG AGTTTGCGCG CGAGCTGTAC GAAGACGAAG GCAAACCGCT GTTCCAGGCC
GTGGTGGAGG CCGCCCGCCT GCGCCTGCGC CCCATCGTCA TGACGTCTCT GGCATTTGTG
CTGGGCGTGG TGCCGCTGGC CATTGCCACG GGCGCGTCCA GCGGCAGCCA GCACTCCATT
GGCACCAGCG TGGTGGGCGG CACCCTGGCG GGCACCTTCC TGGCCATCTT CTTCGTGCCG
CTGTTCTTTT ATGTGATTGC CAGCATCACC CAGCGCTTTC GCAAGGCCCG GCCTGCAGCG
CCCGTGACCC CTATCCAGGA GAAAACCGCA TGA
|
|---|
| Protein sequence | MSKFFINRPI FAWVIAIVIM LLGVLAIKGL AISQYPNVAP PAISISVTYP GASAQTVQDT
VVQVIEQQLN GLDGLRYITS ASESDGSMQI VVTFEQGTDP DIAQVQVQNK LNLATPMLPQ
EVQQQGIRVA KYQMNFMMVV GLVSEDGRMN SKDLADYIAS NIQDPVSRTK GVGDFTLFGA
PYAMRIWLDP AKLNAHQLTP TDVIAAVQSQ NVQISAGQLG GLPTINDKVQ LQATVLGKTR
MKTADEFREI MLKVRPNGAQ VRLKDVADVQ LGGQFSSISG KFDGKPASGL ALRLATGGNV
LESIAAVRDT IAQLEPNFPQ GVKVVYPYDT SPVVQVSIDS VITTLLEAVV LVFLVMLLFL
QSVRATIIPT LAVPVVLLGT FGILLAAGFT INLLTMFAMV LAIGLLVDDA IVVVENVERL
MHDEHLSPKE ATIKSMGQIS GALVGIGVVI SAVFVPMAFM DGSTGVIYRQ FAITIAAAMS
LSVLVALIFT PALCATILKA PVPGKKPARF FAWFNRVFNA SASGYAVGVE GILKRNKGFL
LIYVLLLAGL VALFARIPTA FLPDEDQGTL MVQVQLPSNA SAARTDKVLQ AVSQHLLDNE
KDTVQSVMAV NGFNFAGRGQ NNGLLFVELK PFDERKGAHQ HLKALYGRTW GFVSQLNDAM
IIPIMPPAII ELGNATGYDF FLQDNGGVGH EVLMQARNQM LGMAAQSPKL ALVRPNGLSD
EPQYQIEIDE EKARALNLNL ADINATMSIA WGSAYINDFI DRGRVKKVFL QGKADARVGP
EDFSKWYVRN NLGKMVPFSA FATGKWVYGP AKLERYNGVP AVQIVGSTAP GVSTGEAMAI
LQDMAKQLPP GVDLVWTGLS YEEIKAGDQS AWIMALSMLV VFLCLAALYE SWSIPFSVML
VVPLGILGAV LATLGRGLTN DVFFQIGMIT TMGLAAKNAI LIVEFARELY EDEGKPLFQA
VVEAARLRLR PIVMTSLAFV LGVVPLAIAT GASSGSQHSI GTSVVGGTLA GTFLAIFFVP
LFFYVIASIT QRFRKARPAA PVTPIQEKTA
|
|---|
| |