Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_0278 |
Symbol | rplC |
ID | 4672880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | + |
Start bp | 293167 |
End bp | 293841 |
Gene Length | 675 bp |
Protein Length | 224 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 639837409 |
Product | 50S ribosomal protein L3 |
Protein accession | YP_984608 |
Protein GI | 121592712 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000211938 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00000000129288 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGTCTGA GCAACTCCCT CGGGTTGCTG GGCCGCAAGG TGGGCATGAT GCGTCTGTTC ACCGATGACG GGGACGCAGT GCCCGTCACG GTGGTGGATG TGTCCAACAA CCGCGTGACC CAGGTGAAAA CCCAAGAGAA CGATGGCTAC GTGTCCCTGC AGGTCACGTT CGGTTCGCGC AAGGCATCTC GCGTGACCAA GCCTGAAGCT GGCCACCTCG CCAAGGCGGG TGTTGAAGCC GGTGAAATCA TCCGTGAATT CCGCGTGACC CCCGAAGTCG CAGGCAAGTA CGCCGCTGGC GCTGCTGTGC CCGTGGCTGA TGTGTTCGCC GTGGGCCAGA AGGTCGACGT GCAGGGCACC TCGATCGGTA AGGGCTTCGC CGGCACGATC AAGCGCCACA ACTTCGGTTC GCAGCGCGCC TCGCACGGTA ACAGCCGTTC GCACAACGTT CCTGGTTCCA TCGGTATGGC GCAGGATCCG GGTCGTGTGT TCCCTGGCAA GAAGATGACG GGTCACCTCG GTGATGTCAC CGTCACGACG CAAAACCTCG ACGTGGTTCG CATCGACGAA GCACGCCAAC TGCTCTTGAT TAAGGGCGCT GTTCCGGGCT CCAAGGGTGG GTTCGTCACG GTGCGTCCGG CTGTCAAGGC GCAAGCTTCC AAAGGAGCGA ACTAA
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Protein sequence | MSLSNSLGLL GRKVGMMRLF TDDGDAVPVT VVDVSNNRVT QVKTQENDGY VSLQVTFGSR KASRVTKPEA GHLAKAGVEA GEIIREFRVT PEVAGKYAAG AAVPVADVFA VGQKVDVQGT SIGKGFAGTI KRHNFGSQRA SHGNSRSHNV PGSIGMAQDP GRVFPGKKMT GHLGDVTVTT QNLDVVRIDE ARQLLLIKGA VPGSKGGFVT VRPAVKAQAS KGAN
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