Gene Ajs_0278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_0278 
SymbolrplC 
ID4672880 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp293167 
End bp293841 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content62% 
IMG OID639837409 
Product50S ribosomal protein L3 
Protein accessionYP_984608 
Protein GI121592712 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000211938 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000129288 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGTCTGA GCAACTCCCT CGGGTTGCTG GGCCGCAAGG TGGGCATGAT GCGTCTGTTC 
ACCGATGACG GGGACGCAGT GCCCGTCACG GTGGTGGATG TGTCCAACAA CCGCGTGACC
CAGGTGAAAA CCCAAGAGAA CGATGGCTAC GTGTCCCTGC AGGTCACGTT CGGTTCGCGC
AAGGCATCTC GCGTGACCAA GCCTGAAGCT GGCCACCTCG CCAAGGCGGG TGTTGAAGCC
GGTGAAATCA TCCGTGAATT CCGCGTGACC CCCGAAGTCG CAGGCAAGTA CGCCGCTGGC
GCTGCTGTGC CCGTGGCTGA TGTGTTCGCC GTGGGCCAGA AGGTCGACGT GCAGGGCACC
TCGATCGGTA AGGGCTTCGC CGGCACGATC AAGCGCCACA ACTTCGGTTC GCAGCGCGCC
TCGCACGGTA ACAGCCGTTC GCACAACGTT CCTGGTTCCA TCGGTATGGC GCAGGATCCG
GGTCGTGTGT TCCCTGGCAA GAAGATGACG GGTCACCTCG GTGATGTCAC CGTCACGACG
CAAAACCTCG ACGTGGTTCG CATCGACGAA GCACGCCAAC TGCTCTTGAT TAAGGGCGCT
GTTCCGGGCT CCAAGGGTGG GTTCGTCACG GTGCGTCCGG CTGTCAAGGC GCAAGCTTCC
AAAGGAGCGA ACTAA
 
Protein sequence
MSLSNSLGLL GRKVGMMRLF TDDGDAVPVT VVDVSNNRVT QVKTQENDGY VSLQVTFGSR 
KASRVTKPEA GHLAKAGVEA GEIIREFRVT PEVAGKYAAG AAVPVADVFA VGQKVDVQGT
SIGKGFAGTI KRHNFGSQRA SHGNSRSHNV PGSIGMAQDP GRVFPGKKMT GHLGDVTVTT
QNLDVVRIDE ARQLLLIKGA VPGSKGGFVT VRPAVKAQAS KGAN