| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0262 |
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| Symbol | |
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| ID | 4672385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 277003 |
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| End bp | 278220 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 639837393 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_984592 |
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| Protein GI | 121592696 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00123427 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGTCCACCA TGACCGCAAC TCCCTCCACC CCTTCCACCG CGTCGAAGGC TTCCCGCCGC
AAGGCACTGT TCACCCTGGC CGGCGTCGTA GTGCTCGCCG GCTGCGCCTG GGGCCTGTAC
GACTGGCTGG TCGCCAGCCA CTATGAGCAC ACCGACAACG CCTACGTGCA GGGCAACGTC
ATCCAGATCA CGCCGCAGAC CGGCGGCACG GTGATGTCCA TCCTGGCCGA CGACACCGAC
TTCGTGCGCG CCGGCGCCGC GCTGGTGCAG TTGGACCCAG CCGACGCGCG CGTGGCGCTG
CAGCAGGCCG AGGCCAACCT GGCGCAGGCC GTGCGGCAGA CACGCACGCT GTACGCCAAC
AACAGCGCCC TGGCCGCGCA GGTGCGCCTG CGCGAGGCCG AGGCCGCACG CGCCCAGGCC
GAGATCGCGC GCGCCGAGGA CGACCTGCGC CGCCGCCAGG CCCTGACCGG CGAGGGCGCC
GTCTCGCAGG AGGAACTGCG CCACGCGCAG AGCCAGCTGC AGACCGCGCG CACGCAGTTG
GCCGCTGCGC AGGCAGGCGT GGCCGCCGCG CGCGAGCAGC TCGCCAGCAA CCAGTCGCTC
ACCCAAGGCG TGGCCGTGGC GCAGCACCCC AGCGTGCAGG CCGCAGCCGC CAAGGTGCGC
GAGGCCTACC TGGCCGATCG CCGCACCGCC CTGCCCGCAC CCGTGGACGG CTACGTGGCG
CGGCGCACGG TGCAACTGGG CCAGCGCGTG GCCGCGGGCA CGCCGCTGAT GACCATCGTG
CCGCTGCGCG AGGTCTGGGT GGACGCCAAT TTCAAGGAGA ACCAGCTGCG CAACCTGCGC
CTGGGCCAGC GCGCCACGCT CGTCGCCGAC CTGTACGGCA AGAAGGTGGA ATACACCGGC
ACCGTGGCCG GGTTGGGCGT GGGCACGGGC GCGGCCTTCG CGCTGCTGCC GGCGCAGAAC
GCCACCGGCA ACTGGATCAA GGTGGTGCAG CGGGTGCCCG TGCGCATCGC GCTGGATGCC
GGGCAGCTGG CCGAGCACCC GCTGCGCGTG GGCCTGTCGA TGAACGTGAG CGTGGACACG
CAGGACCGCA GCGGCCCGGC GCTGGCCGAT GCGCCGCGCA AGGAAGCGGT GGCCAGCACG
GCCGTGTACG ACGCGCTGGA CAAGGGTGCC GATGCCGACG TGGCGCGCAT CATCCGCGCC
AACCTGGGCA CGCTCTGA
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| Protein sequence | MSTMTATPST PSTASKASRR KALFTLAGVV VLAGCAWGLY DWLVASHYEH TDNAYVQGNV
IQITPQTGGT VMSILADDTD FVRAGAALVQ LDPADARVAL QQAEANLAQA VRQTRTLYAN
NSALAAQVRL REAEAARAQA EIARAEDDLR RRQALTGEGA VSQEELRHAQ SQLQTARTQL
AAAQAGVAAA REQLASNQSL TQGVAVAQHP SVQAAAAKVR EAYLADRRTA LPAPVDGYVA
RRTVQLGQRV AAGTPLMTIV PLREVWVDAN FKENQLRNLR LGQRATLVAD LYGKKVEYTG
TVAGLGVGTG AAFALLPAQN ATGNWIKVVQ RVPVRIALDA GQLAEHPLRV GLSMNVSVDT
QDRSGPALAD APRKEAVAST AVYDALDKGA DADVARIIRA NLGTL
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