Gene Ajs_0253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAjs_0253 
Symbol 
ID4672308 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax sp. JS42 
KingdomBacteria 
Replicon accessionNC_008782 
Strand
Start bp269592 
End bp270269 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content73% 
IMG OID639837384 
Productputative lipoprotein 
Protein accessionYP_984583 
Protein GI121592687 
COG category[R] General function prediction only 
COG ID[COG3218] ABC-type uncharacterized transport system, auxiliary component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0648241 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGACTA TCAAAAAGAT AGCTGCTAGC GCTTATCAGA TAAGCGCTAA GGCCATATTT 
TGCTTAGCAT CCCTGGCCCT GGTGGCGGGC TGCTCCATCC TCCCCGAGCC GCCGGTGCGC
GCCGATGTGT ACGACTTCGG CCCCGGTCCC TTGCAGGCGC CGGGCCCCGC GGCCAGCGCG
CCGCTGCCGC CGATCGCGCT GGCCGAGGTG ACCGCCACGG GCCTGCCCGA GGGCAGCACC
GCGCTGCTGT ACCGGCTGGC CTATACCAAC GCCCAGCAAC TGCGCCCCTA CACCCAGGCG
CGCTGGAGCC TGCCGCCCGC CGTGCTGCTG CACCAGGCGG TGCGCGAGCG CCTGGGCCAG
CGCCGCGCGG TGCTCTCTGG CGACGACGGC ATGGCCGTGT TGCTGGAGCG CGGCCGCATG
CCCAGCGTGC TGCGCCTGGA GCTGGAGGAG TTCAGCCATG TGTTCGGCGC GCCCCAGGCG
AGCGCCGGCC TGGTGCGTGT GCGCGCCGTG CTGGCCGACG CGAGCACCGC GGGTGAGACG
CTGGTCGCGC AGCGGGTGTT CGTGGCGCGG CGCGATGCCG CCACGCCCGA TGCCGCCGGC
GGCGCCAAGG CCCTGGCCGA TGCGGCGGCC CAGGTGGCCG AGGAGCTGGC CGCATGGGTG
GAGCAGTCCG GCCGCTGA
 
Protein sequence
MMTIKKIAAS AYQISAKAIF CLASLALVAG CSILPEPPVR ADVYDFGPGP LQAPGPAASA 
PLPPIALAEV TATGLPEGST ALLYRLAYTN AQQLRPYTQA RWSLPPAVLL HQAVRERLGQ
RRAVLSGDDG MAVLLERGRM PSVLRLELEE FSHVFGAPQA SAGLVRVRAV LADASTAGET
LVAQRVFVAR RDAATPDAAG GAKALADAAA QVAEELAAWV EQSGR