| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0205 |
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| Symbol | |
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| ID | 4671621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax sp. JS42 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008782 |
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| Strand | - |
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| Start bp | 223914 |
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| End bp | 225614 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639837337 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_984536 |
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| Protein GI | 121592640 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCATGCC AGCGACCGCC CTCCCCCCCC TTGCCATCCG ATGCCGACTT GCGCCGCCTG
GTGCACTTTT CGCCCGTTGA TGGGCGTATC TGGCTGGCTG ATCAGCGCAT GCTGCTCGTC
CATGCGGCAG CCTTTCAGGC GCTGCGGCGC GAACTGGTGG CAAGCCTGGG GCAGGCGCAC
ACACGCCGCC TGCTGATGCG TGCGGGCTAC GCCTCGGGCG AGCGCGACGC GCTGCTGGCG
CGCCAGGTAC GGCCCCATGC CTCGCTGTTC GACGCCTTCG CCGTCGGGCC GCAGTTGCAC
ATGCTCGAGG GCGCGGTGCG CGTGCAGCCG CAGGTGTTCG AGCACGACGA GGCGGCCGAC
CATTTCCACG GCGTCTTCCA GTGGGACCAC AGCTGGGAGG CCGAGGTGCA CCAGCGCGCC
TGGGGCCCGC AGGATGCGCC CGTGTGCTGG ATGCTGGTGG GCTATGCCTC GGGCTACACC
AGCGCCTTCT TTCGGCGTCC GGTTCTTTTC AAGGAAACGC AGTGCACCGC CTGCGGCCAC
GCGCACTGCC TGATCGAGGG CCGCTTTGAG CACGAATGGC CCGACGGCGA GCAACTGGCG
CGCGACTACG ACCCCGACTC CATGCTGGTG CGCCTGGGCG AGCTGCAGTC GCAGGTGGAT
GCGCTGCGCA CCCAGCTACA GCCCGCGGAC GACCAGGGCC CGCTGCTGGG GCGCTCGCGC
GCCTTCAACG ACACCGTGGA GCTGCTGCGC AAGGCCGCGC CCACGCAGGT CACGGTGCTG
CTGACCGGCG AGACCGGCGT GGGCAAGGAG CGCTTTGCGC GCGCGTTGCA CGCCATGGGC
CCGCGCGCCG ACAAGCCCTT CGTGGCCGTC AACTGCGCGG CGCTGCCGGC CGAGCTGATC
GAAAGCGAGC TGTTCGGCGC CGAAAAAGGC GCCTACACCG GCGCCACCGC CGCGCGCGTG
GGCCGCTTCG AGCGCGCGCA CGGCGGCACC TTGCTGCTGG ACGAGCTGGG CGAGCTGCCC
CTGCCCGCGC AGGCCAAGCT GCTGCGCGTG CTGCAGCAGG GCGAAGTGGA GCGCCTGGGC
GGCACGCAGC CGCGCAAGGT GGACGTGCGC GTGATTGCCG CCACCAACGT CGATCTGGAA
AAAGCCGTGG AAGAAGGGCG CTTTCGGCGC GACCTGCTCT ACCGCCTGAA CGTCTATCCC
ATCCGCATAC CAGCGCTGCG CGAGCGCGCG GACGACATAG AACTGCTGGC CATGCACCTG
CTGCAGCGCT ACGCCGCACT GCACGGCAAG CGCCTGGCGG GCTTCACCGA CCTGGCCATG
ACCGCCATGC GCCAGCACGC CTGGCCCGGC AACGTGCGCG AGCTGGAAAA CCTGGTCGAG
CGCGGCGTGA TCCTGGCGCC CCACGACGAC CTGGTGGACG CCGCCATGCT CTTTCCCACA
TCAGTCCTTC CCACGACCCA CACCGTGAAC GCGGCAGGAG CGCTGGAAAG CGAAGCGCAC
TGCCAGCAAA GCGCCGGTCT GTACGACACC CTGCAAGCCA GCGGCCTGAC GCTGGACGCG
CTCGAAGACG CGCTGATCCG CGAAGCCGTG GCGCGCGCGG GCGGCAACCT GGCGGCAGCG
GCGCGCGCGC TGGGGCTGAC CCGCCCACAA CTGAGCTACC GCCTGTCGCG CCTGCAAGAG
CGGCCGCTGG CGGCTTCGTG A
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| Protein sequence | MSCQRPPSPP LPSDADLRRL VHFSPVDGRI WLADQRMLLV HAAAFQALRR ELVASLGQAH
TRRLLMRAGY ASGERDALLA RQVRPHASLF DAFAVGPQLH MLEGAVRVQP QVFEHDEAAD
HFHGVFQWDH SWEAEVHQRA WGPQDAPVCW MLVGYASGYT SAFFRRPVLF KETQCTACGH
AHCLIEGRFE HEWPDGEQLA RDYDPDSMLV RLGELQSQVD ALRTQLQPAD DQGPLLGRSR
AFNDTVELLR KAAPTQVTVL LTGETGVGKE RFARALHAMG PRADKPFVAV NCAALPAELI
ESELFGAEKG AYTGATAARV GRFERAHGGT LLLDELGELP LPAQAKLLRV LQQGEVERLG
GTQPRKVDVR VIAATNVDLE KAVEEGRFRR DLLYRLNVYP IRIPALRERA DDIELLAMHL
LQRYAALHGK RLAGFTDLAM TAMRQHAWPG NVRELENLVE RGVILAPHDD LVDAAMLFPT
SVLPTTHTVN AAGALESEAH CQQSAGLYDT LQASGLTLDA LEDALIREAV ARAGGNLAAA
ARALGLTRPQ LSYRLSRLQE RPLAAS
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