| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0148 |
|---|
| Symbol | |
|---|
| ID | 4673238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 166277 |
|---|
| End bp | 167878 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639837280 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_984479 |
|---|
| Protein GI | 121592583 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.246711 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.747742 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGC GCCTGCTGAC ACACCACACT GCACCCCTGC TGCTGGCGGC CTCGATGCCG
CTGGCTGCCT GGGCGAACCC GTCCTGGCTG ACGGCTGACG GGCGCCCCCT GCCGGCTGCG
CATGAAGCGG TGCGCTGGCT CAACGAAGCC GCAGCCGATG GGCTGGAGCC GGCCGACTAT
GGCGCGCAGC ACCTGAGTGA TGCGCTGGCG GCCGCAGCCG CCCGCGGCCT GGATGCCGCC
TGCGCCGTGG CGCTCGACCA GGAGCTGACG CAGGCCGTGG AGCGCTACCT GTATGAGCTG
CACGGCGGGC GCATCGATCC GGCACGGCTC AACGAGCGCT ACGACCACTC CCGCCGCCCC
CAGCCCGACC TGCGCGCCGC GCTGCAGACC GCGCTGGCCG ACGGCCAGAT CCAGCAGGCG
CGGGACGCGG CCATCCCCCG CGTGCCCATG TACCCGGCGC TGCGCGCACT GCTGGCGCAG
TACCGCGCGA TGGGCGCTCA CCCTGCCTGG GCGCAGCCGC TGCCCGCGCT GCCGGGCCGC
AAGCTCACGC CGGGCCAGCC CTGGGAGGGC CTGGGCGTGC TGGCCGAGCG GCTGGTGGCG
CTGGGCGACC TGCCGCCGCA GCCCACGGGC GAGCCGCCCG CAGCGTCCGC GCCAGCGCAA
TACGCCCCCG CATTGGTCGA GGCCGTCACG GCCTTCCAGC GCCGCCACGG GCTGGAGGCG
GACGGGGTGC TGGGCGCGAC CACGCTGGCG GCGCTGAATG TGCCCCCGGC CGCACGCGCC
GAGCAGATCG CGCTGCAGAT GGAGCGCCTG CGCTGGACGC CCGTGCTGCA GGGCCCGCGC
ATGATCGCCG TGAACGTGCC CGAATACCGC CTGCGTGCCT ATGAGTACGC GGGTGGCAGG
ATCACGCTGC GCCTGTCCAT GGCGGTCATC GTCGGCAAGG CGCTGGATAC GCGCACGCCG
CTGTTCGATG AGGACATGCA GTCCATCGAA TTCAGTCCGT ACTGGAACAT CCCGCCGTCC
ATCGCCCGCG GCGAAATCGT GCCACGCCTG CGCCGCGACC CGGGCTACCT GGCACGGCAG
GGCATGGAGT TCGTCAGCGC GGCGGGCGTG AGCACCGACG CTACACCCGA GATGCTGGGC
GCCGTGCTGG CAGGCCAGGC GCGCATACGC CAGCGCCCGG GGCCGCTGAA CGCGCTGGGC
GATATCAAGT TCGTGCTGCC CAACAACGAC AACATCTACC TGCACCACAC CTCGGCGCCC
ACGCTGTTCG GCCGCAGCCG GCGCGACCTG AGCCACGGCT GCGTGCGTGT CGAGGAGCCG
GTGGCGCTCG CCCAGTTCGT GTTGCAGGAC GATCCCACCT GGACCGTGGA GCGCATCCGT
GCGGCCATGG CGCAGCCCAA GCCTGTGTTC GTACGGCTGC CGCATCCGGT GCCGGTCATC
ATCACGCACA TCACCGTGGT GGTGCAGGAC GGCCGTCCGC ACTTCTATGG CGACCTGTAC
GGCCATGACC GCAAGCTCGC CAGCCTGCTG CGCCAGCATT CGGCAAAACC CTACGATGCG
GTCCGCGCGG GTAGTGCTGC CGGGGTGATC GGTCCAAAAT AG
|
|---|
| Protein sequence | MNLRLLTHHT APLLLAASMP LAAWANPSWL TADGRPLPAA HEAVRWLNEA AADGLEPADY
GAQHLSDALA AAAARGLDAA CAVALDQELT QAVERYLYEL HGGRIDPARL NERYDHSRRP
QPDLRAALQT ALADGQIQQA RDAAIPRVPM YPALRALLAQ YRAMGAHPAW AQPLPALPGR
KLTPGQPWEG LGVLAERLVA LGDLPPQPTG EPPAASAPAQ YAPALVEAVT AFQRRHGLEA
DGVLGATTLA ALNVPPAARA EQIALQMERL RWTPVLQGPR MIAVNVPEYR LRAYEYAGGR
ITLRLSMAVI VGKALDTRTP LFDEDMQSIE FSPYWNIPPS IARGEIVPRL RRDPGYLARQ
GMEFVSAAGV STDATPEMLG AVLAGQARIR QRPGPLNALG DIKFVLPNND NIYLHHTSAP
TLFGRSRRDL SHGCVRVEEP VALAQFVLQD DPTWTVERIR AAMAQPKPVF VRLPHPVPVI
ITHITVVVQD GRPHFYGDLY GHDRKLASLL RQHSAKPYDA VRAGSAAGVI GPK
|
|---|
| |