| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0147 |
|---|
| Symbol | |
|---|
| ID | 4673292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 163503 |
|---|
| End bp | 166241 |
|---|
| Gene Length | 2739 bp |
|---|
| Protein Length | 912 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639837279 |
|---|
| Product | methionine synthase (B12-dependent) |
|---|
| Protein accession | YP_984478 |
|---|
| Protein GI | 121592582 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.287887 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.989958 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTGT CGGGGCTGGA GCCCGTGTTC ATCGGCGAGG GGAGCTTGTT CGTCAACGTG
GGCGAGCGCA CCAACGTCAC CGGCTCCAAG GCGTTCGCGC GCATGATCCT GAACGACCAG
TACGAGCAGG CACTGTCGGT GGCGCGTCAG CAGGTGGAAA ACGGCGCGCA GATCATCGAC
GTGAACATGG ACGAGGCCAT GCTGGACAGC AAGGCCGCGA TGGTGCGCTT CCTGAACCTC
ATTGCCTCCG AGCCCGACAT CGCCCGGGTG CCGGTGATGG TGGACAGCTC CAAGTGGGAG
GTCATCGAGG CCGGCCTGCG CTGCCTGCAG GGCAAGGGCA TCGTCAACTC CATCAGCATG
AAGGAGGGCG TGGAGGAGTT CAAGCGCCAG GCCAAGCTGA TCCGCCGCTA CGGCGCGGCC
GCCGTGGTCA TGGCCTTCGA CGAGAAGGGC CAGGCCGACA CCTTCGCACG CAAGACCGAG
ATCTGCGAGC GCGCCTACCG CATCCTGGTG GACGAGGTGG GCATGGCGCC CGAGGACATC
ATCTTCGACC CCAACATCTT CGCCATCGCC ACGGGCATCG AAGAGCACGC CAACTACGCC
GTGGACTTCA TCGAGGCCGT GCGCTGGATC AAGCAGCATC TGCCGGGCGC CAAGGTGTCG
GGCGGCGTGT CCAACGTGTC GTTCAGCTTC CGCGGCAACG AGCCGGTGCG CGAGGCGATC
CACACCGTGT TCCTGTACCA CGCCATCAAG GCCGGCATGG ACATGGGCAT CGTCAACGCG
GGCATGGTCG GCGTCTACGA CGACCTCGAC CCCGAGCTGC GCGAGCGTGT GGAAGACGTG
GTGTTGAACC GCCGCCCCGA CGCGGCCGAA CGCCTGCTGG AGATCGCCGA GGCCGCCAAG
GGTGCCGCCA AGGACGACAG CAAGAAGCTG GAGTGGCGCG GCACGCCCGA GCACCCGAAA
ACCGTGGGTG AGCGCCTGTC GCATGCGCTG GTACACGGCA TCACCGACTT CATCGTCGAA
GACACCGAGG AGGCCTACCA GCAGATCGTG GTGCAAGGCG GCGGCCGCCC GCTGCACGTG
ATCGAAGGTC CGCTGATGGA CGGCATGAAC ATCGTGGGCG ACCTGTTCGG CGCGGGCAAG
ATGTTCCTGC CCCAGGTGGT CAAGAGCGCC CGCGTGATGA AGCAGGCCGT GGCCCACCTG
ATCCCTTACA TCGAGGAAGA AAAGCGCCAG CAGGAAGCCG CCGGCCTGGA CGTGTCCAGC
AAGGGCAAGA TCGTCATCGC CACCGTGAAG GGCGACGTGC ATGACATCGG CAAGAACATC
GTGACCGTCG TCCTGCAGTG CAACAACTTC GAGGTCATCA ACATGGGCGT GATGGTGCCC
TGCCATGAAA TCCTGGCGCG CGCCAAGGCC GAAGGCGCGG ACATCATCGG CCTGTCGGGC
CTCATCACGC CCAGCCTGGA AGAGATGCAG TACGTGGCCG GCGAGATGGA CAAGGACGAG
TACTTCCGCA TCAAGAAGAT TCCATTGCTG ATCGGCGGCG CCACCTGCTC GCGCGTGCAC
ACGGCGGTCA AGATCGCGCC GCAGTACCAG GGCCCCGTGG TCTACGTGCC CGATGCCTCG
CGCAGCGTGA GCGTGGCGCA GAGCCTGCTG GGCGAGCAAA AGGACAGCTA CCTGGCGGAG
GTGCAGGCCG ACTACGACCA TGTGCGCCAC CTGCATGCCA ACAAGAAGAA GACACCGGTG
TGGCCGCTGG CGCAGTGCCG CGCCAACAAG ACGCGCATCG ACTGGGCGCA TTACCAGCCG
CCGGCGCCCA AGTTCATCGG CCGGCGCGTG ATCAAGAACA TCGACCTGGC CGAGCTGGTG
CCCTTCATCG ACTGGGCGCC GTACTTCCAG ACCTGGGACC TGGCCGGCAA GTACCCCGAC
ATCCTGCAGG ACGAGGTGGT GGGCGAGGAA GCCACGCGCG TCTTCCGCGA CGCACAGGCC
ATGCTCAAGA AGATCGTGGA GGGCCGCTGG CTCACGGCCC ATGCCGTGGT GGGCTTCTGG
CCCGCCAACA CCGTGCGCGA TGACGACATC GAGCTGTACG CCGATGCCGC GCGCGACAAG
GTCGTGCTCA CCTGGTACGG CCTGCGCCAG CAGGCCGAGA AGCAGCCCGA CGCCGAGGGC
CGCATGCGCC CCAGTCGCTG CCTGGCCGAC TTCATCGCGC CTCGCCTGGA GGGTGGCGCA
CCCACGCAGG CCGACCACAT TGGCGCGTTT GCCGTCACTG CCGGCATCGG CGTGGATGCC
AAGGTGGCCG AGTTCATGGC CGACCACGAC GACTACAGCG CCATCACCCT CAAGGCCCTG
GCCGATCGCC TGGCCGAGGC CGGTGCCGAA TGGCTGCACC ACCGCGTGCG CACCGACTGG
TGGGGCTACC AGGCGGGCGA GCGGCTGTCC AACGACGAAC TGATCGCCGA GAAGTACGTG
GGCATCCGCC CCGCGCCGGG CTACCCCGCA TGCCCCGATC ACCGGGTGAA GAAGCCGCTG
TTTGCATTGC TGGGCACGGC CGACGTGGAC ATGGACATTA CCGACAGCTA CGCCATGACG
CCCGCGGCCA GTGTGAGCGG CTTTTACTTC AGCCACCCCG AGAGCACCTA CTTCAGCGTC
GGCAAGATCG ACGATGCGCA GGTGCAGGAC ATGGCCCAGC GCAGCGGAGT GCCCCTGGCC
GAGGTGGAGC GCGCGCTCGC GCCGAATCTG GGGCTTTAG
|
|---|
| Protein sequence | MRLSGLEPVF IGEGSLFVNV GERTNVTGSK AFARMILNDQ YEQALSVARQ QVENGAQIID
VNMDEAMLDS KAAMVRFLNL IASEPDIARV PVMVDSSKWE VIEAGLRCLQ GKGIVNSISM
KEGVEEFKRQ AKLIRRYGAA AVVMAFDEKG QADTFARKTE ICERAYRILV DEVGMAPEDI
IFDPNIFAIA TGIEEHANYA VDFIEAVRWI KQHLPGAKVS GGVSNVSFSF RGNEPVREAI
HTVFLYHAIK AGMDMGIVNA GMVGVYDDLD PELRERVEDV VLNRRPDAAE RLLEIAEAAK
GAAKDDSKKL EWRGTPEHPK TVGERLSHAL VHGITDFIVE DTEEAYQQIV VQGGGRPLHV
IEGPLMDGMN IVGDLFGAGK MFLPQVVKSA RVMKQAVAHL IPYIEEEKRQ QEAAGLDVSS
KGKIVIATVK GDVHDIGKNI VTVVLQCNNF EVINMGVMVP CHEILARAKA EGADIIGLSG
LITPSLEEMQ YVAGEMDKDE YFRIKKIPLL IGGATCSRVH TAVKIAPQYQ GPVVYVPDAS
RSVSVAQSLL GEQKDSYLAE VQADYDHVRH LHANKKKTPV WPLAQCRANK TRIDWAHYQP
PAPKFIGRRV IKNIDLAELV PFIDWAPYFQ TWDLAGKYPD ILQDEVVGEE ATRVFRDAQA
MLKKIVEGRW LTAHAVVGFW PANTVRDDDI ELYADAARDK VVLTWYGLRQ QAEKQPDAEG
RMRPSRCLAD FIAPRLEGGA PTQADHIGAF AVTAGIGVDA KVAEFMADHD DYSAITLKAL
ADRLAEAGAE WLHHRVRTDW WGYQAGERLS NDELIAEKYV GIRPAPGYPA CPDHRVKKPL
FALLGTADVD MDITDSYAMT PAASVSGFYF SHPESTYFSV GKIDDAQVQD MAQRSGVPLA
EVERALAPNL GL
|
|---|
| |