Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_0088 |
Symbol | |
ID | 4673273 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008782 |
Strand | - |
Start bp | 93706 |
End bp | 97032 |
Gene Length | 3327 bp |
Protein Length | 1108 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639837220 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_984419 |
Protein GI | 121592523 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0221086 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCACCCCG CCCACCGCCA GGAGTTCCGC CAGTCCCTCA TCTGGTTCGC CGTGCTGCTG GTCAGCCTGT GGATGTTGAA GACCCTGCCC GCGCCGGATG CCGCGCGCGG CATGGCGGGC TACTTGCCGC TGCACACCGC GATGGAGGTC GTGTCCATCG GCGTGGCAGC AATGGTGTTC AGCATCAGTT GGGCCACGCA AAAGTACCGA CCCAACGGGC GGGTGCTGGT CCTCGGCCTG GGGCTGCTGG GCGTGGCGGT GCTGGACCTG ACCCACAGCC TGTCCTACGC CGGCATGCCG GACTTCGTGA CCCCCAGCGA CCCGGAAAAG GCCATCAACT TCTGGCTGGC CGCGCGCGCG CTGGCGGCGC TGGCCCTGCT GTGGGCCGCG TTATGGCCCC ACCGCTGGAA TGAATGGCTG GGCCGCCGCT CGCGCTACGC GGGGCTGTTG TGGGTGGCGC TGCTGGTGGG CGCGGTGCAC TACGTGCTGC TGGGGCATCC GCAGTGGCTG CCCCGCACCT TCACGCCCGA GGCAGGGCTC ACGCCCTTCA AGGTCCGTTT CGAATACGCG CTGGCAACCG CGTACGTGCT GGCGGGGGTG GGCTTCCTCA CGCAACTGCG CCATGCGCGC GAGTTCGGTC TGTCGCACCT GGCGCTGGCA TCGTTCACCA TGGCCATGAG CGAGATCTTC TTCACGCTCT ACGCCAACGT GACCGATGTG TACAACGTCG CCGGCCACTT CTACAAGATC CTGGCCTATG GCTTCCTGTA CCGCGGCCTG TTCGTGGAAA CGGTGCAGAT CCCGTACCTG GACCTGCGCG CCGCCGAGGC CCGGCAGCGG GCCACGCTGA ACACGCTGCC CGACCTGCTG TTCGAGGTGG ACCGCAAGGG GGTGTACCTC GCGGTGCACG CCAACGAGAC CAGCAAGCTC CTGACCCCGC TGCCCCAGTT GCTGGGAAAA ACGCTGGACG AGGCGCTGCC GCCGGCGGCG GCCGCGCAGT GTTTCGAGGC ACTGGCGGAG GCTGAACGCA CGGGCATGAG CCGCGGCCAG CGCATCACGT TGCCGCTGCC CCTGGGCGAG CGGCATTTCG AGCTGTCCGT CTCCCGCAAA TCCGCGGTCG CGGGCCAGCC CGACACCTTC CTGATGCTGT CGCGCGACAT CACGCCCACC GTGGAGAACG AGGAGCGCAT TCGCTCCGAG GCCGGCCTGA ACGCCGTCCT GCTGGACCTG CAGCAGCACG ACATCCACCA GCCCGAGGCA GACCTGCTGC GGCGCGGCCT GGCGCATGCC CAGACCCTGA CCGGCAGCGC GCTGGCCGTG CTGTACTTCG TGCACGACGA CGCTCGCGGC ACCTCGCTGG CCGCCTGCTT GCACGAAAAC GCCCCGCCCG ACATGCCGCC GTGGGAAACC GCCCTGCGCG AACGCCGCGC CGTGGTGACG AACGCGCCGC ACGATGCGGC GGCTGGGCGC GCACCGGGCG GCGCGACGGC CCGCTGGGCT TGCGTGCCCG TGGTGGAAGG CGGCAGGCCG CGCCTGCTGC TGGGCGTGGC CGGCAAAGCG CGGGACTATC ACCCACGCGA CGCACAGGCG CTGCAGACCG TGGCCGACGC CCTCTGGAAG CACACGGCCC AGCGCCGCCA GGAGGCCGTC ATCCACCGCC TGTCGGAGGC GCTGGACCAG AGCCCCAGTC CGGTGGTCAT CACCGACATC GACGCCAGCA TCGTCTACGT CAACAAGGCC TTCAGCGAAG TCAGCGGCTA CGGCGCACAA GAGGTGCTGG GCCGCAACCC GCGCGTGCTG CAGTCGGGAC TGACGCCGCG GACCACCTAT GCCGATATGT GGACCAAGCT GCCGCGCGGC CTGCCCTGGC AGGGGGAACT CATCAACCGC CGCAAGAACG GACAGGTCTA CACGGAAAAC GCCTCGCTTT ACCCCGTTCG CGACGTGTTC GGCGAAGTGA CGCATTACGT CGCGCACATG GAGGACATCA CGCAGCGGCG CGAGGCGGAG GAGCGCATCC GCGCCCTCTC CAACTACGAC ACGCTGACCG GCCTGCTCAA CAAGAAAGCC TTCGACGAAC AGTTGACGCA AGCCATCGAC CGCGCCGACG CAAGCCACGA ACGGGTGTCG GTGCTGTGGT TCGACCTGGA CAACTTCAAG CTGGTGAACG AAACCCTGGG CCACGCGGCC GGTGACGAGT TGCTGTTGGA GATGGGCAAC CGGCTGCGCG CCTGCCTGGC GCCGCACATT CCCGTGGCGC GCTATTCGGG CGACGCGTTC ACGGCCATCG TGCCCCTGGC GGACCAGGCG GCGGTGGCGC TGCTGGCGCA GGATGCGCTG GCGCAGCTGC AGACCACACT GCAGATCCAC GGCCATGCCG TATCCGTCAG CGCGTCGGCC GGCATCGCCG TCTACCCCGA CGACGCGCGC ACCGCCAGCA CCTTGGCGTC CGCCGCGGAA GTGGCGATGT ACCGCGTCAA GCAGGACGGG CGCAACGGGC TGCGCTTCTT CGCACCCGAG ATGCAGGCGC ACACGCAACG TTCGCTGGAG CTGGCCGCCG GCCTCAAGGA CGCGGCGCAC CGCGGCGAGC TGTTCCTGGT GTTCCAGCCC CAGCGCACGC TGGGCAGCGG CGCACTGGCG GGCGCCGAGG CGCTGCTGCG CTGGCGGCAT CCGCGCTGGG GGCTGGTGTC TCCGGCCGAG TTCATCCCGA TCGCCGAGCA AAGCGGCTCC ATCGTGGCCA TCGATTTCTG GGTGGTGGAG CAGGTGGCGC AGCAGTTGCG CGCCTGGGAT GCCGCGGGCC TGCCGCCGCT GGTGGTGGCG GTGAACGTAT CGGCTGCGCA GTTCGCGCGG CCGCACTTCG TCGAGGAGCT GGTGCGCATC CTGCAGCGCA TGGACATTTC ACCCCAGCGC ATCGAGGTGG AGCTGACCGA GGCCGTCGCG CTGAAAAACC CGGAACAGGC CGAGACCACC ATCCGCCGCC TGCATGAGGT GGGCTTTCGC GTGGCGCTGG ACGACTTCGG CACAGGCTAT TCCTCCATGA GCTACCTCAA GCGCTACGCC ATCGACAAAC TCAAGATCGA CCAGTCCTTC GTGCGCGAAC TCGCCCACCA GGCCAGCGAC CAGGCCATCG TGACGGCCAT CATCAAGATG GCCCACAGCC TGCGCATGGC CACCATTGCC GAAGGCGTGG AGACGGCCGA GCAGGCCGCG TTGCTGCAGG CCTGCGGCTG CGACGAAATG CAAGGCTACT GGTACAGCCG GCCGCTGGAG CCCGCCGCGT TCGAGGCCTT TGTGCGCAAT GCGCAGGCTG GCGTCGAGTT GGCCTGA
|
Protein sequence | MHPAHRQEFR QSLIWFAVLL VSLWMLKTLP APDAARGMAG YLPLHTAMEV VSIGVAAMVF SISWATQKYR PNGRVLVLGL GLLGVAVLDL THSLSYAGMP DFVTPSDPEK AINFWLAARA LAALALLWAA LWPHRWNEWL GRRSRYAGLL WVALLVGAVH YVLLGHPQWL PRTFTPEAGL TPFKVRFEYA LATAYVLAGV GFLTQLRHAR EFGLSHLALA SFTMAMSEIF FTLYANVTDV YNVAGHFYKI LAYGFLYRGL FVETVQIPYL DLRAAEARQR ATLNTLPDLL FEVDRKGVYL AVHANETSKL LTPLPQLLGK TLDEALPPAA AAQCFEALAE AERTGMSRGQ RITLPLPLGE RHFELSVSRK SAVAGQPDTF LMLSRDITPT VENEERIRSE AGLNAVLLDL QQHDIHQPEA DLLRRGLAHA QTLTGSALAV LYFVHDDARG TSLAACLHEN APPDMPPWET ALRERRAVVT NAPHDAAAGR APGGATARWA CVPVVEGGRP RLLLGVAGKA RDYHPRDAQA LQTVADALWK HTAQRRQEAV IHRLSEALDQ SPSPVVITDI DASIVYVNKA FSEVSGYGAQ EVLGRNPRVL QSGLTPRTTY ADMWTKLPRG LPWQGELINR RKNGQVYTEN ASLYPVRDVF GEVTHYVAHM EDITQRREAE ERIRALSNYD TLTGLLNKKA FDEQLTQAID RADASHERVS VLWFDLDNFK LVNETLGHAA GDELLLEMGN RLRACLAPHI PVARYSGDAF TAIVPLADQA AVALLAQDAL AQLQTTLQIH GHAVSVSASA GIAVYPDDAR TASTLASAAE VAMYRVKQDG RNGLRFFAPE MQAHTQRSLE LAAGLKDAAH RGELFLVFQP QRTLGSGALA GAEALLRWRH PRWGLVSPAE FIPIAEQSGS IVAIDFWVVE QVAQQLRAWD AAGLPPLVVA VNVSAAQFAR PHFVEELVRI LQRMDISPQR IEVELTEAVA LKNPEQAETT IRRLHEVGFR VALDDFGTGY SSMSYLKRYA IDKLKIDQSF VRELAHQASD QAIVTAIIKM AHSLRMATIA EGVETAEQAA LLQACGCDEM QGYWYSRPLE PAAFEAFVRN AQAGVELA
|
| |