| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0039 |
|---|
| Symbol | |
|---|
| ID | 4671564 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | + |
|---|
| Start bp | 39815 |
|---|
| End bp | 41077 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639837172 |
|---|
| Product | major facilitator superfamily transporter |
|---|
| Protein accession | YP_984371 |
|---|
| Protein GI | 121592475 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.19043 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCCA CCCCCAACGC AAGCGCCCCT GCCTCCCTGC GCGAGGACGC GCGCACCATC
GGCCTGATCG GGCTGGCCCA TGGCTCGTCG CACTTTTTTC ACATGCTGCT GCCGCCGCTG
TTCCCGTTCC TGATCGCGGA CTTCGGCTTC TCGTACTCCG AGCTGGGGCT GCTGCTGTCG
GTGTTCTTCG TGGTCTCGGG CGTGGGCCAG GCGCTGGCCG GCTTCGTCGT GGACCGCGTG
GGCGCGCGGC CGGTGCTGTT CTTCGCGCTG GCGTGCTTTG CCACCGCCGG GCTGACGGCC
GCCAGCGCCA GCGGCTACGC CGGCCTGGTG GCGGCGGCAG TGCTGGCCGG GCTGGGCAAC
GCACCCTTCC ACCCGGTGGA CTTCACCATC CTGAACAAGC GCGTGTCGCC GGCGCGCCTG
GGCCACGGCT TCTCGGTGCA TGGCATCTCG GGCAACCTGG GCTGGGCCAC GGCACCGGTG
TTCATGGCCG GCATCGCCAC GGCCGCGGGC TCCTGGCGCG TAGCCTGTGC CAGCGGTGCG
GTGCTGGCGC TGGTGGTGCT GGCCATCATG GTGATCAACC GTGACGCGCT GGACGACCGC
CACGGCGCAC GCGGCACGCA GCCGGCCGCA ACCGGGACGG CGGGCGCCGC GCCCGAGCAC
CCACTGGCTT TCCTGCGTCT GCCGGCCGTG TGGCTGTGCT TTTCGTTCTT CTTCTGGAGC
ACCTGCTCGC TCAGCGCCAT CCAGAGCTTT GCCGGCCCGG CGCTGCAAAA ACTCTACGGC
ATCCCGCTGA CCACCACGGC GCTGGTGGTC ACCGGCTACA TGCTGTGCGG CGCCGCCGGC
ATGGTGCTGG GTGGCTTCCT CGTCGGGCGG GTGCAGCGGC TGGAGAAGAC CATCAGCGTC
TGCCTGCTGG CCTCGGCCGC GCTGCTGACG CTGGTGGGAC TGGGCGTGCT GCCGGGCATG
GTGGCGCTGG CCGTGGCGGC GCTGGCCGGG GCGGGCATTG GCATCGCCGG GCCCTCGCGC
GACATGCTGA TCAAGCGCGC CGCGCCGCCT GGGGCCACGG GGCGCGTGTA CGGCACGGTG
TATTCGGGGC TGGACTTGGG CTTCAGCGTG GCCGCGCCGG TGTTCGGCGC CCTGCTGGAC
GGGGGCATGA ACGCCGCCAT CTTCTACGGC TCGGCCACGG CGCTGGTGCT GAGCGTGGTG
TCGGCAGGTT TTGTCGGCGT GGGCGTGGCC GCGCGCCGGC GCGCCGTGCC TGCTGCGGCG
TAG
|
|---|
| Protein sequence | MQPTPNASAP ASLREDARTI GLIGLAHGSS HFFHMLLPPL FPFLIADFGF SYSELGLLLS
VFFVVSGVGQ ALAGFVVDRV GARPVLFFAL ACFATAGLTA ASASGYAGLV AAAVLAGLGN
APFHPVDFTI LNKRVSPARL GHGFSVHGIS GNLGWATAPV FMAGIATAAG SWRVACASGA
VLALVVLAIM VINRDALDDR HGARGTQPAA TGTAGAAPEH PLAFLRLPAV WLCFSFFFWS
TCSLSAIQSF AGPALQKLYG IPLTTTALVV TGYMLCGAAG MVLGGFLVGR VQRLEKTISV
CLLASAALLT LVGLGVLPGM VALAVAALAG AGIGIAGPSR DMLIKRAAPP GATGRVYGTV
YSGLDLGFSV AAPVFGALLD GGMNAAIFYG SATALVLSVV SAGFVGVGVA ARRRAVPAAA
|
|---|
| |