| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ajs_0038 |
|---|
| Symbol | |
|---|
| ID | 4671579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax sp. JS42 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008782 |
|---|
| Strand | - |
|---|
| Start bp | 38883 |
|---|
| End bp | 39749 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 639837171 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_984370 |
|---|
| Protein GI | 121592474 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.175935 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCA TTGCCGCCGC CGGCCCCGGC CGGGCCCTGT CCTATGTCGA GTCGCTCACG
CCGCACCTGT TCGTGCCCGG CCCGGCGCGG CCGGTGCGCG CCAAGTACCG CCAGCTGGGC
GCCGCCACCC AGGTGCGCCC GCACAGCCAC CCCTGGGCGC AGGTGGCGAT CTCCACCAGC
GGCGCGCTGC GTCTGACGGT GCCGGGCGGC ACCTTCATCG TGCCGCCCTC GCGGGCGCTG
TGGATCCCGC CCGGCGTGGA GCACGCCGTG ACCATGGTGG AGGACGCCGA CCTGCGCACG
CTGTACTTCC ACCAGCCGCC CGGCCACTGC GGCCCCGGCG TGGCCCGCGC CGACGAAGCG
CCGTGGCGCC AGTGCCGGGT GCTGGAGGTC TCGCAGCTGC TGCGCGCCTT GGTGCGCGAG
ATGCCCACCG CCGCCGACGG CGAGCCGCTG CCGCCTGAGC AGCTGCGCCG CGAGCGCCAC
CTGAGCGCCT TGATCCTGGA CGAGCTGCGC CGCGCCGCCA GCGTGCCGCT GGGCATCGAC
CTGCCGCACG ACAAGCGCCT GCGCCAGCTG TGCGAGGCCG TGCTGGCCGA TCCCACGCGC
CACGAGACGC TGGCCGAGTG GGCGCGCGGC ACCGGCGCCA GCCCGCGCAC GGTGGCGCGG
CTGTTCCGCC AGGAGCTGTC CAGCACCTTC ACCCAGTGGC GCCAGCAGGT CATCCTGGCC
CAGGCGCTGG CCTTGGCGGC TCGGCGCCGG CCCATCAACC AGATCGCCGC CGAGCTGGGC
TACAGCAGTC CCAGCGCCTT TTCAGCCATG GTGCGGCGCG CGGTGGGCAT GTCGCCGGGG
CGCTTCCTGG GCTCGCCGCA GTCGTGA
|
|---|
| Protein sequence | MPSIAAAGPG RALSYVESLT PHLFVPGPAR PVRAKYRQLG AATQVRPHSH PWAQVAISTS
GALRLTVPGG TFIVPPSRAL WIPPGVEHAV TMVEDADLRT LYFHQPPGHC GPGVARADEA
PWRQCRVLEV SQLLRALVRE MPTAADGEPL PPEQLRRERH LSALILDELR RAASVPLGID
LPHDKRLRQL CEAVLADPTR HETLAEWARG TGASPRTVAR LFRQELSSTF TQWRQQVILA
QALALAARRR PINQIAAELG YSSPSAFSAM VRRAVGMSPG RFLGSPQS
|
|---|
| |